Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN45_RS02890 Genome accession   NZ_CP141698
Coordinates   586991..587296 (-) Length   101 a.a.
NCBI ID   WP_029345656.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-91A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581991..592296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN45_RS02865 (VNN45_02865) - 583882..584766 (+) 885 WP_019293007.1 RluA family pseudouridine synthase -
  VNN45_RS02870 (VNN45_02870) - 584837..585682 (-) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN45_RS02875 (VNN45_02875) comGF 585914..586354 (-) 441 WP_019293008.1 competence type IV pilus minor pilin ComGF -
  VNN45_RS02880 (VNN45_02880) comGE 586335..586568 (-) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  VNN45_RS02885 (VNN45_02885) comGD 586600..587016 (-) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN45_RS02890 (VNN45_02890) comYC 586991..587296 (-) 306 WP_029345656.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN45_RS02895 (VNN45_02895) comGB 587315..588334 (-) 1020 WP_256777882.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN45_RS02900 (VNN45_02900) comGA 588273..589217 (-) 945 WP_019293012.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN45_RS02905 (VNN45_02905) rpsU 589403..589579 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN45_RS02910 (VNN45_02910) guaB 589705..591186 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11363.31 Da        Isoelectric Point: 10.2213

>NTDB_id=918403 VNN45_RS02890 WP_029345656.1 586991..587296(-) (comYC) [Lactococcus petauri strain R21-91A]
MKKKRLKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVSN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918403 VNN45_RS02890 WP_029345656.1 586991..587296(-) (comYC) [Lactococcus petauri strain R21-91A]
ATGAAAAAAAAGAGACTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTATCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

62.376

100

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae R6

58.416

100

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

58.416

100

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396