Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV39_RS02525 Genome accession   NZ_AP025472
Coordinates   513443..514669 (-) Length   408 a.a.
NCBI ID   WP_261888862.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508443..519669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS02485 rpsP 508735..508983 (+) 249 WP_261888859.1 30S ribosomal protein S16 -
  OCV39_RS02490 rimM 509009..509563 (+) 555 WP_113799269.1 ribosome maturation factor RimM -
  OCV39_RS02495 trmD 509594..510352 (+) 759 WP_113799267.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCV39_RS02500 rplS 510394..510747 (+) 354 WP_113799265.1 50S ribosomal protein L19 -
  OCV39_RS02505 yacG 510862..511059 (-) 198 WP_017054173.1 DNA gyrase inhibitor YacG -
  OCV39_RS02510 zapD 511094..511834 (-) 741 WP_017054172.1 cell division protein ZapD -
  OCV39_RS02515 coaE 511862..512476 (-) 615 WP_261888860.1 dephospho-CoA kinase -
  OCV39_RS02520 pilD 512478..513347 (-) 870 WP_261888861.1 A24 family peptidase Machinery gene
  OCV39_RS02525 pilC 513443..514669 (-) 1227 WP_261888862.1 type II secretion system F family protein Machinery gene
  OCV39_RS02530 pilB 514806..516485 (-) 1680 WP_261888863.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV39_RS02535 pilA 516486..516896 (-) 411 WP_261888864.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OCV39_RS02540 nadC 517154..518044 (-) 891 WP_261888865.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV39_RS02545 ampD 518184..518732 (+) 549 WP_261889459.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45719.19 Da        Isoelectric Point: 10.5849

>NTDB_id=91828 OCV39_RS02525 WP_261888862.1 513443..514669(-) (pilC) [Vibrio cortegadensis strain CECT 7227]
MKHNKPIPLKNFRWKGINSLGKKTSGQMLALSELEVRDKLKEQHIQVKKLKRGSVSLLTRLAHRVKPRDITLLTRQLATM
LTTGVPIVQALKLVADNHRKAEMKSILLQISKGVEAGTPISKVMRTSSHHFDRLYTDLVATGEQAGSLAEVFERLATYRE
KSEQLRSKVIKALIYPTMVMFVALSVSYLMLTMVIPEFETMFSGFGADLPWFTQQVMRLSHWMQAYSLYIVVFTVGAVIV
IKSMRKRLFSFRLMTSRWGLKFPIIGSVVMKASLAKFSRTLSTSFSAGIPILSSLQTTAKTAGNVHFETAIHQVHQETSS
GVPMYIAMRNTNAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTLIGGLVVAMYLPI
FNLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=91828 OCV39_RS02525 WP_261888862.1 513443..514669(-) (pilC) [Vibrio cortegadensis strain CECT 7227]
ATGAAACACAATAAACCAATACCACTCAAAAATTTTCGTTGGAAAGGCATCAATAGCTTAGGAAAAAAAACATCAGGACA
GATGCTAGCCCTCAGTGAGCTTGAAGTAAGAGATAAACTCAAAGAGCAACATATTCAGGTAAAAAAGCTAAAGCGCGGCA
GTGTTTCTCTACTCACGCGATTAGCTCATCGAGTCAAACCAAGAGATATTACTCTTCTTACTCGCCAACTTGCCACCATG
CTCACTACAGGGGTGCCGATTGTCCAAGCGCTCAAACTCGTGGCAGACAATCACCGAAAAGCGGAAATGAAATCGATTCT
CCTGCAGATAAGTAAGGGCGTTGAGGCAGGAACGCCAATATCAAAAGTAATGAGAACCAGCAGTCACCACTTCGATAGAC
TCTATACAGACCTTGTTGCAACGGGTGAGCAAGCGGGAAGCTTGGCGGAAGTCTTTGAACGTTTAGCCACTTATAGAGAA
AAAAGCGAACAACTGCGTTCCAAAGTTATTAAAGCGCTTATCTACCCGACAATGGTCATGTTCGTCGCGTTAAGCGTATC
GTATTTGATGTTAACAATGGTGATCCCTGAATTTGAAACCATGTTCTCTGGTTTTGGGGCCGATCTTCCATGGTTTACCC
AACAAGTGATGCGACTTTCCCATTGGATGCAAGCTTATAGCCTATATATCGTAGTATTCACTGTCGGCGCTGTTATTGTC
ATAAAAAGTATGCGTAAACGTCTATTTTCGTTTCGCTTAATGACCTCTCGCTGGGGGCTCAAATTTCCGATCATAGGCAG
CGTGGTAATGAAAGCCTCTCTCGCCAAATTCAGTCGAACGCTATCGACTAGTTTCAGTGCCGGAATCCCTATCCTATCAA
GTTTGCAAACTACCGCGAAAACCGCAGGTAATGTTCATTTTGAAACCGCTATTCATCAAGTCCATCAAGAAACGTCGTCA
GGGGTTCCAATGTACATTGCGATGCGTAATACCAATGCATTTCCTGAAATGGTACTGCAAATGGTGATGATTGGAGAGGA
ATCTGGAAAACTCGACGATATGCTGAACAAAGTGGCGACCATTTATGAATTTGAAGTCGACAATACGGTTGATAATCTCG
GAAAAATATTAGAACCATTGATCATCGTTTTCTTAGGGACATTAATTGGAGGTCTCGTGGTCGCGATGTACCTACCAATC
TTTAACTTAATGAGTGTTATAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.922

100

0.789
  pilC Vibrio campbellii strain DS40M4

69.25

98.039

0.679
  pilC Legionella pneumophila strain ERS1305867

41.912

100

0.419
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

41.646

98.284

0.409
  pilC Acinetobacter baumannii D1279779

41.5

98.039

0.407
  pilG Neisseria gonorrhoeae MS11

38.847

97.794

0.38
  pilG Neisseria meningitidis 44/76-A

38.596

97.794

0.377

Multiple sequence alignment