Detailed information NTG0091827

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCV39_RS02520
• Genome accession: NZ_AP025472
• Coordinates: 512478..513347 (-)
• Length: 289 a.a.
• NCBI ID: WP_261888861.1
• Uniprot ID: -
• Organism: Vibrio cortegadensis strain CECT 7227
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 507478..518347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV39_RS02485	rpsP	508735..508983 (+)	249	WP_261888859.1	30S ribosomal protein S16	-
OCV39_RS02490	rimM	509009..509563 (+)	555	WP_113799269.1	ribosome maturation factor RimM	-
OCV39_RS02495	trmD	509594..510352 (+)	759	WP_113799267.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCV39_RS02500	rplS	510394..510747 (+)	354	WP_113799265.1	50S ribosomal protein L19	-
OCV39_RS02505	yacG	510862..511059 (-)	198	WP_017054173.1	DNA gyrase inhibitor YacG	-
OCV39_RS02510	zapD	511094..511834 (-)	741	WP_017054172.1	cell division protein ZapD	-
OCV39_RS02515	coaE	511862..512476 (-)	615	WP_261888860.1	dephospho-CoA kinase	-
OCV39_RS02520	pilD	512478..513347 (-)	870	WP_261888861.1	A24 family peptidase	Machinery gene
OCV39_RS02525	pilC	513443..514669 (-)	1227	WP_261888862.1	type II secretion system F family protein	Machinery gene
OCV39_RS02530	pilB	514806..516485 (-)	1680	WP_261888863.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCV39_RS02535	pilA	516486..516896 (-)	411	WP_261888864.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
OCV39_RS02540	nadC	517154..518044 (-)	891	WP_261888865.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32492.61 Da
• Isoelectric Point: 6.6221

>NTDB_id=91827 OCV39_RS02520 WP_261888861.1 512478..513347(-) (pilD) [Vibrio cortegadensis strain CECT 7227]
MEIFEYYPWVFPILATIFGLIIGSFLNVVIHRLPLMMEREWKQECAESFPEYNLPKPEGVFNLSVPRSTCPKCKTQLRLI
DNIPVISWLFLKGKCHHCENPISARYPAVETLTALMSFAVASHFGFSYFTVALLFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALSVFQISPVSLQDAIIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIILLSSLVGL
FFGLIQLRLQKQGIDKAFPFGPYLAIAGWISLLWGSNIMDWYLTSILGG

Nucleotide

• Length: 870 bp

>NTDB_id=91827 OCV39_RS02520 WP_261888861.1 512478..513347(-) (pilD) [Vibrio cortegadensis strain CECT 7227]
ATGGAAATTTTTGAGTACTACCCGTGGGTTTTTCCTATTCTCGCAACTATTTTTGGCTTAATCATTGGTAGCTTTCTAAA
TGTTGTCATTCATCGCTTGCCTCTCATGATGGAGCGCGAATGGAAACAAGAGTGTGCTGAATCCTTTCCTGAATATAATC
TTCCGAAACCTGAAGGCGTATTTAACTTAAGTGTTCCACGTTCGACATGCCCGAAATGCAAAACTCAATTACGTTTGATC
GACAACATACCTGTCATAAGTTGGTTATTCCTAAAAGGGAAATGCCACCACTGTGAAAATCCAATTAGCGCTCGTTACCC
TGCGGTTGAAACTCTTACTGCGTTAATGAGTTTTGCTGTGGCTAGTCACTTTGGTTTCAGTTATTTTACGGTCGCTTTAC
TGTTTTTCACTTTTGTATTAATTGCAGCCACGTTTATTGACCTTGATACTATGCTGCTTCCAGACCAACTAACCCTGCCA
CTCATGTGGGCGGGTATCGCTCTATCCGTTTTTCAAATCAGCCCTGTATCGCTGCAAGACGCTATCATAGGCGCGATGGC
AGGTTACCTCTGCTTATGGTCAGTTTACTGGGGGTTTAAGCTGCTCACAGGCAAGGAAGGGATGGGTTATGGTGACTTTA
AGCTTCTCGCAGCCCTTGGCGCTTGGTTAGGCTGGCAGCACCTTCCTCTCATTATTTTACTCTCATCCCTAGTCGGGCTA
TTTTTCGGTCTAATCCAACTTCGACTGCAGAAGCAAGGTATCGACAAAGCTTTTCCGTTTGGCCCTTATTTAGCCATCGC
AGGTTGGATCAGCTTGCTATGGGGCAGTAACATCATGGATTGGTATCTCACATCCATCTTAGGGGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.431	99.654	0.772
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	54.044	94.118	0.509
pilD	Acinetobacter nosocomialis M2	54.044	94.118	0.509
pilD	Neisseria gonorrhoeae MS11	46.316	98.616	0.457