Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCV39_RS02535 | Genome accession | NZ_AP025472 |
| Coordinates | 516486..516896 (-) | Length | 136 a.a. |
| NCBI ID | WP_261888864.1 | Uniprot ID | - |
| Organism | Vibrio cortegadensis strain CECT 7227 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 511486..521896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV39_RS02515 | coaE | 511862..512476 (-) | 615 | WP_261888860.1 | dephospho-CoA kinase | - |
| OCV39_RS02520 | pilD | 512478..513347 (-) | 870 | WP_261888861.1 | A24 family peptidase | Machinery gene |
| OCV39_RS02525 | pilC | 513443..514669 (-) | 1227 | WP_261888862.1 | type II secretion system F family protein | Machinery gene |
| OCV39_RS02530 | pilB | 514806..516485 (-) | 1680 | WP_261888863.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCV39_RS02535 | pilA | 516486..516896 (-) | 411 | WP_261888864.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| OCV39_RS02540 | nadC | 517154..518044 (-) | 891 | WP_261888865.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCV39_RS02545 | ampD | 518184..518732 (+) | 549 | WP_261889459.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCV39_RS02550 | pdhR | 519200..519967 (+) | 768 | WP_017054164.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14393.69 Da Isoelectric Point: 7.8181
>NTDB_id=91830 OCV39_RS02535 WP_261888864.1 516486..516896(-) (pilA) [Vibrio cortegadensis strain CECT 7227]
MKHSNKKIQKGFTLIELMIVVAIIGVLAAIAIPAYSDYVKKSEVSSGLATIKALVTPAEMIYQENGVLAAATTLATLGTK
DVANNLGTLSVLADNKIQFKFGTDSSINNETLIFERKSTGWECAKSANIPAVDGCS
MKHSNKKIQKGFTLIELMIVVAIIGVLAAIAIPAYSDYVKKSEVSSGLATIKALVTPAEMIYQENGVLAAATTLATLGTK
DVANNLGTLSVLADNKIQFKFGTDSSINNETLIFERKSTGWECAKSANIPAVDGCS
Nucleotide
Download Length: 411 bp
>NTDB_id=91830 OCV39_RS02535 WP_261888864.1 516486..516896(-) (pilA) [Vibrio cortegadensis strain CECT 7227]
ATGAAACACAGTAACAAGAAAATACAGAAAGGTTTTACCCTAATTGAATTGATGATTGTAGTGGCGATTATTGGGGTGTT
GGCAGCGATAGCAATTCCAGCCTACAGTGATTATGTAAAAAAATCAGAGGTATCTTCTGGTCTTGCAACAATTAAAGCTC
TTGTAACCCCTGCAGAAATGATTTATCAAGAAAATGGGGTTCTAGCTGCAGCCACTACCTTAGCCACTCTAGGTACCAAA
GATGTAGCAAACAACTTAGGAACACTAAGCGTATTAGCCGATAACAAAATCCAATTCAAATTTGGTACAGATAGTTCTAT
TAATAACGAAACATTGATCTTTGAAAGAAAATCAACTGGTTGGGAATGTGCTAAATCTGCAAATATTCCAGCTGTAGATG
GTTGCTCATAA
ATGAAACACAGTAACAAGAAAATACAGAAAGGTTTTACCCTAATTGAATTGATGATTGTAGTGGCGATTATTGGGGTGTT
GGCAGCGATAGCAATTCCAGCCTACAGTGATTATGTAAAAAAATCAGAGGTATCTTCTGGTCTTGCAACAATTAAAGCTC
TTGTAACCCCTGCAGAAATGATTTATCAAGAAAATGGGGTTCTAGCTGCAGCCACTACCTTAGCCACTCTAGGTACCAAA
GATGTAGCAAACAACTTAGGAACACTAAGCGTATTAGCCGATAACAAAATCCAATTCAAATTTGGTACAGATAGTTCTAT
TAATAACGAAACATTGATCTTTGAAAGAAAATCAACTGGTTGGGAATGTGCTAAATCTGCAAATATTCCAGCTGTAGATG
GTTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
62.143 |
100 |
0.64 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.06 |
100 |
0.456 |
| pilA | Vibrio cholerae strain A1552 |
41.06 |
100 |
0.456 |
| pilA | Vibrio cholerae C6706 |
41.06 |
100 |
0.456 |
| pilA | Pseudomonas aeruginosa PAK |
38.667 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.984 |
94.853 |
0.36 |