Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV39_RS01190 Genome accession   NZ_AP025472
Coordinates   265796..267592 (+) Length   598 a.a.
NCBI ID   WP_261888790.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260796..272592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS01170 pilM 262886..263977 (+) 1092 WP_261888788.1 type IV pilus assembly protein PilM Machinery gene
  OCV39_RS01175 pilN 263964..264599 (+) 636 WP_261888789.1 PilN domain-containing protein Machinery gene
  OCV39_RS01180 pilO 264592..265182 (+) 591 WP_017052577.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV39_RS01185 pilP 265172..265696 (+) 525 WP_390903227.1 pilus assembly protein PilP Machinery gene
  OCV39_RS01190 pilQ 265796..267592 (+) 1797 WP_261888790.1 type IV pilus secretin PilQ Machinery gene
  OCV39_RS01195 aroK 267777..268295 (+) 519 WP_017052574.1 shikimate kinase AroK -
  OCV39_RS01200 aroB 268319..269407 (+) 1089 WP_261888791.1 3-dehydroquinate synthase -
  OCV39_RS01205 - 269525..271120 (+) 1596 WP_261888792.1 AAA family ATPase -
  OCV39_RS01210 - 271190..272044 (+) 855 WP_136996025.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 65033.07 Da        Isoelectric Point: 4.3878

>NTDB_id=91818 OCV39_RS01190 WP_261888790.1 265796..267592(+) (pilQ) [Vibrio cortegadensis strain CECT 7227]
MMNGIEILMRWFIRSAIVGALCLASTAGAADLTLNELQNIDFKLNKDKEAVIIVELSSRSIVVDVKRGYLNGEQSKVDAL
KSTPQGLQVELINTQVSDEQLNIIDVKDFSTIVNNIEVSRNKHNTQLDIRVSEDYQYSYALKDRFLEVTVSPVIEPVPEK
KQSILDKEGKLISLNFQDIAVRNVLQLIADYNDFNLVVSDSVSGNLTLRLDSVSWQQALDIILQVKGLDKRVEGSVILVA
PKEELDLREQRELEKLRMNDELIELKSEILTINFAKASDIAEMIMGEGEITMLSERGSLTIDERTNSLLIRELPENIEVI
RSIVTSLDIPVKQVQIEARIVTVKEGNLDELGVRWGFSSTNGSTTIGGSLESNLGAIGIYDGGGSDGGSDGGDEGSGGVS
IDDFLSVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLEAASSGAT
SVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGEAIAIDTQRIGTQVLVNNGETVVLGGIFQHSVVNSVD
KVPLLGDLPLLGALFRRSYENIGKSELLIFVTPKVVVQ

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=91818 OCV39_RS01190 WP_261888790.1 265796..267592(+) (pilQ) [Vibrio cortegadensis strain CECT 7227]
ATGATGAATGGAATAGAGATATTAATGCGCTGGTTTATTCGAAGCGCCATCGTTGGTGCACTGTGCTTGGCCTCAACGGC
AGGCGCAGCGGACCTGACACTCAACGAGCTACAAAATATTGACTTTAAACTGAATAAGGACAAAGAAGCAGTCATTATTG
TTGAGTTAAGCTCACGCTCCATTGTGGTGGATGTGAAGAGAGGCTATTTGAATGGAGAGCAATCAAAGGTCGATGCTTTG
AAAAGTACGCCTCAAGGGTTACAAGTTGAGCTGATTAATACTCAGGTATCGGATGAGCAGCTCAATATTATTGATGTAAA
AGATTTCTCGACGATAGTAAATAATATCGAGGTATCGCGTAATAAACACAACACACAGCTCGACATTCGCGTATCGGAAG
ATTATCAGTACAGTTATGCGTTAAAAGATCGTTTTCTAGAAGTGACGGTGAGTCCTGTTATAGAGCCCGTACCCGAAAAG
AAACAGAGTATTTTAGATAAAGAGGGGAAGTTGATTTCACTTAATTTCCAAGATATTGCAGTACGAAACGTATTGCAGCT
GATTGCCGATTACAATGATTTTAATTTGGTGGTGTCAGATTCGGTATCTGGCAACTTAACGCTGCGTTTAGATTCAGTTT
CATGGCAGCAAGCGCTTGATATTATTCTACAAGTTAAAGGGTTAGATAAAAGAGTCGAAGGTAGTGTCATTCTTGTCGCG
CCTAAAGAAGAGTTGGATCTTCGTGAGCAGCGGGAACTAGAAAAGCTACGCATGAATGATGAACTTATTGAGCTTAAATC
AGAAATCCTCACCATCAACTTTGCTAAAGCATCAGATATCGCTGAGATGATCATGGGGGAGGGGGAAATCACGATGCTGT
CTGAGCGCGGGTCCCTTACGATTGACGAAAGAACCAATTCATTATTGATACGAGAGTTGCCAGAGAATATTGAAGTGATA
CGCAGCATTGTTACCTCACTAGATATTCCGGTGAAGCAAGTTCAAATTGAAGCTAGGATCGTGACCGTCAAAGAGGGCAA
CCTTGATGAACTTGGGGTTCGTTGGGGGTTCTCATCCACTAATGGGTCTACAACAATTGGTGGTTCGCTTGAAAGTAACT
TAGGCGCTATCGGTATTTACGATGGAGGTGGCAGTGATGGCGGTAGCGATGGTGGTGATGAAGGCAGTGGCGGCGTCAGT
ATTGATGACTTTTTGAGTGTGAACCTTGCCGCCACATCGCCTAATGCTTCGAGTATTGCGTTCCAGGTGGCGAAATTAGG
ATCGGATACGCTGTTGGATTTAGAGCTTTCGGCATTGCAGCAAGAGTCAAAAGCCGAAATTATTTCTAGCCCTCGTTTAA
TCACCACCAATAAAAAACCAGCTTACATTGAACAAGGTACCGAAATTCCATATTTAGAAGCGGCGTCGAGTGGAGCGACA
TCGGTATCATTTAAAAAAGCGGTTCTAAGTTTAAAGGTGACGCCACAGATCACGCCCGATAATCGTTTGGTGCTCGATTT
GAGTGTAACCCAGGATCGTCCGGGCCAAGTGGTGAAAACGGGAACGGGAGAGGCAATTGCCATTGATACACAGAGAATTG
GAACTCAAGTTCTGGTTAATAATGGGGAAACTGTGGTTTTAGGGGGGATTTTTCAGCACAGCGTGGTCAATAGCGTCGAT
AAAGTTCCACTGCTTGGAGACTTGCCATTATTAGGGGCACTTTTCCGCCGAAGCTATGAAAACATTGGGAAAAGTGAGCT
TTTAATTTTCGTTACACCTAAGGTTGTAGTGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(268-333)

Bacterial type II and III secretion system protein (Secretin)

(438-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

73.484

96.488

0.709
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

68.333

100

0.686
  pilQ Vibrio cholerae strain A1552

68.333

100

0.686
  pilQ Pseudomonas aeruginosa PAK

40.949

95.151

0.39
  pilQ Legionella pneumophila strain Lp02

40.07

95.151

0.381
  pilQ Legionella pneumophila strain ERS1305867

40.07

95.151

0.381
  comQ Acinetobacter baylyi ADP1

37.543

97.993

0.368

Multiple sequence alignment