Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OCV39_RS01185 Genome accession   NZ_AP025472
Coordinates   265172..265696 (+) Length   174 a.a.
NCBI ID   WP_390903227.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260172..270696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS01170 pilM 262886..263977 (+) 1092 WP_261888788.1 type IV pilus assembly protein PilM Machinery gene
  OCV39_RS01175 pilN 263964..264599 (+) 636 WP_261888789.1 PilN domain-containing protein Machinery gene
  OCV39_RS01180 pilO 264592..265182 (+) 591 WP_017052577.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV39_RS01185 pilP 265172..265696 (+) 525 WP_390903227.1 pilus assembly protein PilP Machinery gene
  OCV39_RS01190 pilQ 265796..267592 (+) 1797 WP_261888790.1 type IV pilus secretin PilQ Machinery gene
  OCV39_RS01195 aroK 267777..268295 (+) 519 WP_017052574.1 shikimate kinase AroK -
  OCV39_RS01200 aroB 268319..269407 (+) 1089 WP_261888791.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19466.86 Da        Isoelectric Point: 10.3713

>NTDB_id=91817 OCV39_RS01185 WP_390903227.1 265172..265696(+) (pilP) [Vibrio cortegadensis strain CECT 7227]
MKANPNPIWALCVLPLLIMGCKANHEPLDEYVQQVERQVRKQAIQLEPAAQLSVQPYTQRMGREPFVLPKEAVVHTQPKV
KTDCWQPRSRSKSGRLERYPIGKLRLKGVMGSGGAISGLVQTPLGSVEKVKNGQYMGLNNGQVIQVNAKYLLINETLPDG
LGCWYKRHVKLALK

Nucleotide


Download         Length: 525 bp        

>NTDB_id=91817 OCV39_RS01185 WP_390903227.1 265172..265696(+) (pilP) [Vibrio cortegadensis strain CECT 7227]
GTGAAGGCTAACCCTAACCCTATATGGGCACTCTGTGTGCTCCCTCTACTCATAATGGGTTGTAAGGCAAATCATGAGCC
ATTAGATGAATACGTCCAGCAAGTTGAGCGGCAAGTGCGTAAACAAGCCATTCAGCTTGAACCCGCGGCTCAATTATCCG
TGCAGCCCTATACACAGCGAATGGGGCGAGAACCCTTCGTTCTACCCAAAGAAGCTGTGGTTCACACTCAGCCTAAGGTC
AAGACGGATTGCTGGCAGCCCAGATCTCGCTCTAAGTCGGGTCGGTTGGAGCGTTATCCGATTGGAAAATTACGCCTAAA
AGGAGTGATGGGATCTGGTGGTGCGATATCGGGTCTTGTGCAGACGCCATTAGGAAGCGTTGAGAAAGTCAAAAATGGGC
AGTACATGGGCCTCAATAATGGCCAAGTGATTCAAGTGAATGCGAAGTACTTATTAATTAATGAGACGCTGCCTGATGGC
TTGGGCTGCTGGTATAAGCGTCATGTTAAGTTGGCATTGAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

60.92

100

0.609
  pilP Vibrio campbellii strain DS40M4

54.878

94.253

0.517

Multiple sequence alignment