Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | OCV39_RS01180 | Genome accession | NZ_AP025472 |
| Coordinates | 264592..265182 (+) | Length | 196 a.a. |
| NCBI ID | WP_017052577.1 | Uniprot ID | A0A1E5D2C0 |
| Organism | Vibrio cortegadensis strain CECT 7227 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 259592..270182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV39_RS01165 | - | 260166..262742 (-) | 2577 | WP_261888787.1 | penicillin-binding protein 1A | - |
| OCV39_RS01170 | pilM | 262886..263977 (+) | 1092 | WP_261888788.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCV39_RS01175 | pilN | 263964..264599 (+) | 636 | WP_261888789.1 | PilN domain-containing protein | Machinery gene |
| OCV39_RS01180 | pilO | 264592..265182 (+) | 591 | WP_017052577.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCV39_RS01185 | pilP | 265172..265696 (+) | 525 | WP_390903227.1 | pilus assembly protein PilP | Machinery gene |
| OCV39_RS01190 | pilQ | 265796..267592 (+) | 1797 | WP_261888790.1 | type IV pilus secretin PilQ | Machinery gene |
| OCV39_RS01195 | aroK | 267777..268295 (+) | 519 | WP_017052574.1 | shikimate kinase AroK | - |
| OCV39_RS01200 | aroB | 268319..269407 (+) | 1089 | WP_261888791.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22757.98 Da Isoelectric Point: 4.4720
>NTDB_id=91816 OCV39_RS01180 WP_017052577.1 264592..265182(+) (pilO) [Vibrio cortegadensis strain CECT 7227]
MVNFQELDMDEITEWPLVAQSLVLLVLILVLQGVGAWFYWVPQNEDLQQLKQQEQTLKSTLHIKANKVAVLPMLQSQLTE
LTSRYDYLLQQLPVQKELASMLASVNELGLDHDLTFTRIDWGEKQNQDFLYRLPLNIELTGSYHDIGDFAEAIAKLPRII
SFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVKSEG
MVNFQELDMDEITEWPLVAQSLVLLVLILVLQGVGAWFYWVPQNEDLQQLKQQEQTLKSTLHIKANKVAVLPMLQSQLTE
LTSRYDYLLQQLPVQKELASMLASVNELGLDHDLTFTRIDWGEKQNQDFLYRLPLNIELTGSYHDIGDFAEAIAKLPRII
SFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVKSEG
Nucleotide
Download Length: 591 bp
>NTDB_id=91816 OCV39_RS01180 WP_017052577.1 264592..265182(+) (pilO) [Vibrio cortegadensis strain CECT 7227]
ATGGTTAACTTCCAAGAGCTTGATATGGACGAAATCACTGAGTGGCCGCTGGTTGCTCAGTCACTGGTGCTTTTAGTGCT
GATCCTTGTACTTCAAGGTGTCGGAGCGTGGTTCTATTGGGTGCCTCAAAATGAGGATTTACAACAACTAAAGCAGCAGG
AACAAACGCTTAAATCTACCTTGCACATCAAGGCCAATAAAGTGGCTGTGTTGCCAATGTTGCAGTCTCAACTTACGGAG
TTGACCAGTCGTTACGATTACCTGTTGCAACAGCTACCCGTGCAGAAAGAGCTAGCGAGCATGTTGGCATCGGTGAATGA
GCTTGGGTTGGACCATGACTTAACCTTTACTCGAATCGATTGGGGTGAGAAGCAAAATCAGGATTTTCTGTATCGCTTAC
CGCTGAATATTGAGTTAACGGGTAGTTATCACGACATAGGTGACTTTGCTGAAGCGATTGCCAAACTGCCAAGGATCATC
AGTTTTGATGACGTAGATTGGCAAAGGGTCAGTCAAGAGAGCAGTACTTTGCATTTTCGAGTTCGAGCCTATACCTACCA
ATTCAAACCGGAGGTGAAAAGTGAAGGCTAA
ATGGTTAACTTCCAAGAGCTTGATATGGACGAAATCACTGAGTGGCCGCTGGTTGCTCAGTCACTGGTGCTTTTAGTGCT
GATCCTTGTACTTCAAGGTGTCGGAGCGTGGTTCTATTGGGTGCCTCAAAATGAGGATTTACAACAACTAAAGCAGCAGG
AACAAACGCTTAAATCTACCTTGCACATCAAGGCCAATAAAGTGGCTGTGTTGCCAATGTTGCAGTCTCAACTTACGGAG
TTGACCAGTCGTTACGATTACCTGTTGCAACAGCTACCCGTGCAGAAAGAGCTAGCGAGCATGTTGGCATCGGTGAATGA
GCTTGGGTTGGACCATGACTTAACCTTTACTCGAATCGATTGGGGTGAGAAGCAAAATCAGGATTTTCTGTATCGCTTAC
CGCTGAATATTGAGTTAACGGGTAGTTATCACGACATAGGTGACTTTGCTGAAGCGATTGCCAAACTGCCAAGGATCATC
AGTTTTGATGACGTAGATTGGCAAAGGGTCAGTCAAGAGAGCAGTACTTTGCATTTTCGAGTTCGAGCCTATACCTACCA
ATTCAAACCGGAGGTGAAAAGTGAAGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
72.821 |
99.49 |
0.724 |
| pilO | Vibrio campbellii strain DS40M4 |
69.474 |
96.939 |
0.673 |