Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCV39_RS01175 Genome accession   NZ_AP025472
Coordinates   263964..264599 (+) Length   211 a.a.
NCBI ID   WP_261888789.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258964..269599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS01160 oxyR 259165..260058 (+) 894 WP_017052581.1 DNA-binding transcriptional regulator OxyR -
  OCV39_RS01165 - 260166..262742 (-) 2577 WP_261888787.1 penicillin-binding protein 1A -
  OCV39_RS01170 pilM 262886..263977 (+) 1092 WP_261888788.1 type IV pilus assembly protein PilM Machinery gene
  OCV39_RS01175 pilN 263964..264599 (+) 636 WP_261888789.1 PilN domain-containing protein Machinery gene
  OCV39_RS01180 pilO 264592..265182 (+) 591 WP_017052577.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV39_RS01185 pilP 265172..265696 (+) 525 WP_390903227.1 pilus assembly protein PilP Machinery gene
  OCV39_RS01190 pilQ 265796..267592 (+) 1797 WP_261888790.1 type IV pilus secretin PilQ Machinery gene
  OCV39_RS01195 aroK 267777..268295 (+) 519 WP_017052574.1 shikimate kinase AroK -
  OCV39_RS01200 aroB 268319..269407 (+) 1089 WP_261888791.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24002.51 Da        Isoelectric Point: 7.5211

>NTDB_id=91815 OCV39_RS01175 WP_261888789.1 263964..264599(+) (pilN) [Vibrio cortegadensis strain CECT 7227]
MLDSSHALHRVNLLPWREAKRAQHRRRFFGLVILSFLLAVGIQWGGGLYFSDQKSQQQARLTYLKQYIAQLDSKIDALDV
VKQEHDSIMTRLDMVEKLQRGRNKTTEFMNLIAQLIPEGVYVDKIKMNGQDLELSGISDSTARLATMLDNLERSSLLVDV
EMHSIVLGKKRFGIDFQTFNVSFTFNLSEEKKETETDELVASQAKLGGSHG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=91815 OCV39_RS01175 WP_261888789.1 263964..264599(+) (pilN) [Vibrio cortegadensis strain CECT 7227]
ATGTTAGACAGTAGTCATGCATTACATCGGGTAAACCTATTGCCGTGGAGGGAGGCAAAGCGCGCACAGCATCGTCGCCG
GTTTTTCGGTTTAGTCATTCTAAGCTTTTTGCTGGCAGTTGGCATTCAGTGGGGTGGGGGCCTCTATTTCTCTGATCAAA
AGAGCCAGCAACAAGCGCGGCTGACTTACCTTAAGCAATATATCGCCCAGTTAGATTCTAAAATTGATGCTCTGGATGTG
GTGAAGCAGGAGCATGATTCGATCATGACGCGTTTAGACATGGTTGAAAAACTGCAGAGAGGGAGAAATAAAACGACGGA
GTTCATGAACTTAATTGCTCAACTGATTCCTGAAGGGGTGTATGTCGATAAAATCAAAATGAATGGTCAGGATCTTGAGC
TATCAGGGATCAGTGATAGCACCGCTCGCTTGGCAACGATGCTCGATAATTTAGAGCGTTCTTCATTGCTGGTCGATGTA
GAGATGCACTCAATCGTATTGGGCAAAAAGCGTTTTGGGATCGATTTTCAAACCTTCAATGTGTCGTTCACTTTTAATTT
GTCTGAGGAAAAGAAAGAGACAGAAACTGATGAGCTGGTGGCTTCGCAAGCTAAATTAGGAGGATCGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(109-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

56.158

96.209

0.54
  pilN Vibrio campbellii strain DS40M4

62.921

84.36

0.531

Multiple sequence alignment