Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV19_RS16060 Genome accession   NZ_AP025463
Coordinates   3572825..3573937 (-) Length   370 a.a.
NCBI ID   WP_065676891.1    Uniprot ID   A0A1C3JG91
Organism   Vibrio celticus strain CECT 7224     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3567825..3578937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS16030 hemF 3568347..3569264 (-) 918 WP_065676888.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV19_RS16035 - 3569284..3569841 (-) 558 WP_065676889.1 L-threonylcarbamoyladenylate synthase -
  OCV19_RS16040 purE 3570037..3570522 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV19_RS16045 - 3570528..3571658 (+) 1131 WP_065676890.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV19_RS16050 - 3571764..3572333 (-) 570 WP_004735775.1 type I DNA topoisomerase -
  OCV19_RS16055 - 3572346..3572822 (-) 477 WP_029235873.1 DUF494 family protein -
  OCV19_RS16060 dprA 3572825..3573937 (-) 1113 WP_065676891.1 DNA-processing protein DprA Machinery gene
  OCV19_RS16065 - 3573934..3575025 (-) 1092 WP_065676892.1 LysM peptidoglycan-binding domain-containing protein -
  OCV19_RS16070 def 3575166..3575678 (+) 513 WP_017058772.1 peptide deformylase -
  OCV19_RS16075 fmt 3575716..3576663 (+) 948 WP_017058773.1 methionyl-tRNA formyltransferase -
  OCV19_RS16080 rsmB 3576753..3578033 (+) 1281 WP_017058774.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40077.92 Da        Isoelectric Point: 7.5354

>NTDB_id=91714 OCV19_RS16060 WP_065676891.1 3572825..3573937(-) (dprA) [Vibrio celticus strain CECT 7224]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQISYLRQQAPREVEACLAWLARQSNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADKICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPNKSENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91714 OCV19_RS16060 WP_065676891.1 3572825..3573937(-) (dprA) [Vibrio celticus strain CECT 7224]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCCCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCTAAGCAGATCT
CCTACTTAAGACAGCAAGCTCCTAGAGAAGTGGAGGCTTGCTTAGCGTGGCTAGCAAGGCAGTCCAACCATCACATCATT
ACCCCTAATTGCCCTCATTATCCCAAACTGCTGAATGAGACAGCCTCCGCGCCAAGCGTGCTTTTCGTTAAGGGGCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGTAACGCCAGTCTCGAAGGGCTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTTGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCTGGCTTGGATTCCATTTACCCTGCACGTCACCGAAATCT
AGCGGATAAAATTTGTGAGAATGGTGCGCTGATCTCAGAGTTCCGTCCAAGCGCTAAACCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTTGTTGTTGAGGCGGCTGAGAAAAGCGGTTCTCTGATTACG
GCGCGTTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCACTTCCCGGTTCGATTCATAACCCAACCAGTCGCGGAGGCAA
CAGTCTAATTAAGGCAGGAGCATGTTTGGTACAGAGCGCTCAAGATGTTCTAATTGAAATAAAGAGTCTGTTAGACTGGT
CCATAGATCAGCAGCCCAGTTTGTTCGAACCTACGCCGAACAAGAGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(304-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JG91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Legionella pneumophila strain ERS1305867

44.78

98.378

0.441
  dprA Neisseria meningitidis strain C311

38.539

100

0.414
  dprA Neisseria meningitidis MC58

38.539

100

0.414
  dprA Haemophilus influenzae Rd KW20

44.807

91.081

0.408
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397
  dprA Acinetobacter baumannii D1279779

41.159

88.649

0.365
  dprA Acinetobacter baylyi ADP1

40.179

90.811

0.365

Multiple sequence alignment