Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U4959_RS01785 Genome accession   NZ_CP141284
Coordinates   383473..384702 (-) Length   409 a.a.
NCBI ID   WP_151690733.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378473..389702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS01760 (U4959_01760) - 379794..380120 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  U4959_RS01765 (U4959_01765) rlmB 380310..381059 (+) 750 WP_151831121.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  U4959_RS01770 (U4959_01770) - 381091..382002 (+) 912 WP_004958607.1 DMT family transporter -
  U4959_RS01775 (U4959_01775) coaE 381999..382598 (-) 600 WP_004958609.1 dephospho-CoA kinase -
  U4959_RS01780 (U4959_01780) pilD 382600..383460 (-) 861 WP_324272906.1 A24 family peptidase Machinery gene
  U4959_RS01785 (U4959_01785) pilC 383473..384702 (-) 1230 WP_151690733.1 type II secretion system F family protein Machinery gene
  U4959_RS01790 (U4959_01790) pilB 384727..386451 (-) 1725 WP_004958615.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U4959_RS01795 (U4959_01795) tpiA 386797..387588 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  U4959_RS01800 (U4959_01800) secG 387601..387930 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  U4959_RS01820 (U4959_01820) rimP 388553..389077 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44921.35 Da        Isoelectric Point: 9.8960

>NTDB_id=916875 U4959_RS01785 WP_151690733.1 383473..384702(-) (pilC) [Acinetobacter junii strain H1]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVGMSQWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=916875 U4959_RS01785 WP_151690733.1 383473..384702(-) (pilC) [Acinetobacter junii strain H1]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGTGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATTACGGTTTTCACACGCCAATTAGCTACA
ATGATGAAAGCAGGTGTACCGTTGGTACAAGGCTTTGAGATTGTTGCTGAAGGCTTAGAAAACCCATCCATGCGTGAGGT
CGTACTAGGATTAAAAAGTGAAGTTGAAGGCGGTAATACTTTCGCTGGTGCTTTAAAAAAGTATCCTCAATACTTCGATA
CCTTATTTTGCTCACTCGTTGAATCAGGGGAACAATCTGGTGCGCTTGAGACCATGCTAGATCGTGTCGCTGTGTATAAG
GAAAAAAGTGAGTTACTCAAACAAAAAATTAAAAAGGCAATGAAGTATCCAATTACGGTGATTGTAGTTGCTGTCATCGT
TACAATTATTTTGATGGTGAAAGTGGTCCCCGTCTTCCAAGATCTGTTTAGTTCATTTGGAGCAGACTTACCCGCATTTA
CCAAAATGGTTGTCGGTATGTCTCAATGGATGCAAGAATATTGGTTCATTCTGATTATCGTTATTGGTGCAATTATTGCT
GCATTTCTAGAAGCTAAAAAACGCAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGACTGCCAATCTTTGG
TGATCTCGTATATAAAGCAATTATTGCTCGCTACAGTCGTACACTAGCAACAACATTTGCGGCGGGCGTTCCATTAATTG
ATGCGCTTACGTCCACAGCAGGCGCAACCAATAATGTCGTTTATGAAGAAGCCGTACTTAAGATTAGAGAAGATGTTGCA
ACTGGACAACAACTGCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCGATGGCAATTCAAATGGTCGCCATTGGTGA
GGAGTCTGGTGCGCTTGATTCGATGCTAGATAAAGTCGCAACACACTATGAAAATGAAGTCGACAACGCTGTAGATGGTC
TGACTTCGATGATGGAACCATTAATCATGGCAATCCTAGGTATTCTTGTTGGTGGTTTAGTTGTTGCTATGTACCTTCCA
ATCTTCCAAATGGGTTCCGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

99.756

0.907
  pilC Acinetobacter baylyi ADP1

86.275

99.756

0.861
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.267

0.599
  pilC Legionella pneumophila strain ERS1305867

53.827

99.022

0.533
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

41.912

99.756

0.418
  pilC Vibrio campbellii strain DS40M4

39.756

100

0.399
  pilC Thermus thermophilus HB27

37.157

98.044

0.364