Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U4959_RS01780 Genome accession   NZ_CP141284
Coordinates   382600..383460 (-) Length   286 a.a.
NCBI ID   WP_324272906.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377600..388460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS01760 (U4959_01760) - 379794..380120 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  U4959_RS01765 (U4959_01765) rlmB 380310..381059 (+) 750 WP_151831121.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  U4959_RS01770 (U4959_01770) - 381091..382002 (+) 912 WP_004958607.1 DMT family transporter -
  U4959_RS01775 (U4959_01775) coaE 381999..382598 (-) 600 WP_004958609.1 dephospho-CoA kinase -
  U4959_RS01780 (U4959_01780) pilD 382600..383460 (-) 861 WP_324272906.1 A24 family peptidase Machinery gene
  U4959_RS01785 (U4959_01785) pilC 383473..384702 (-) 1230 WP_151690733.1 type II secretion system F family protein Machinery gene
  U4959_RS01790 (U4959_01790) pilB 384727..386451 (-) 1725 WP_004958615.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U4959_RS01795 (U4959_01795) tpiA 386797..387588 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  U4959_RS01800 (U4959_01800) secG 387601..387930 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31998.53 Da        Isoelectric Point: 7.4720

>NTDB_id=916874 U4959_RS01780 WP_324272906.1 382600..383460(-) (pilD) [Acinetobacter junii strain H1]
MLSFFTYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPASTCPKCQTP
IKWFQNIPIISWLALRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTANAAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=916874 U4959_RS01780 WP_324272906.1 382600..383460(-) (pilD) [Acinetobacter junii strain H1]
ATGCTTTCTTTTTTTACTTATTTTATTGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTATTTAGTCTCTGCATCGG
CAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAGGAATGCCAAATGCTTTTAC
ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGCTTCTACTTGTCCTAAGTGTCAAACGCCT
ATTAAATGGTTCCAGAATATTCCTATTATTAGTTGGTTAGCACTCCGTGGTAAATGTGGCACTTGCCAGAATCCAATTAG
CATTCGCTACCCGCTGATTGAACTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATTCAGA
TGCTTTTCGGCTTAATTCTAACGTGGACACTTATTGCACTTACTTTTATTGATTTTGATACACAATTACTACCTGATCGC
TTTACGCTACCTTTGGCAGCATTAGGTCTGGGTATTAATACTTTTGCAATCTATACAACGGCTAACGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTATATTACCTATTTAAAGTCATCACCGGTAAAGAAGGCATGGGGTATG
GTGATTTTAAATTGCTTGCAGCACTTGGTGCATGGATGGGTCCTATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

82.517

100

0.825
  pilD Acinetobacter nosocomialis M2

82.517

100

0.825
  pilD Vibrio cholerae strain A1552

54.478

93.706

0.51
  pilD Vibrio campbellii strain DS40M4

51.88

93.007

0.483
  pilD Neisseria gonorrhoeae MS11

46.52

95.455

0.444