Detailed information NTG0916876

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AB0U10_RS11830
• Genome accession: NZ_CP160104
• Coordinates: 2455168..2456178 (-)
• Length: 336 a.a.
• NCBI ID: WP_000568520.1
• Uniprot ID: -
• Organism: Escherichia coli strain 72322051416_S37
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2450168..2461178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0U10_RS11810	znuA	2450968..2451900 (-)	933	WP_001347089.1	zinc ABC transporter substrate-binding protein ZnuA	-
AB0U10_RS11815	znuC	2451979..2452734 (+)	756	WP_000202996.1	zinc ABC transporter ATP-binding protein ZnuC	-
AB0U10_RS11820	znuB	2452731..2453516 (+)	786	WP_000571478.1	zinc ABC transporter permease subunit ZnuB	-
AB0U10_RS11830	ruvB	2455168..2456178 (-)	1011	WP_000568520.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AB0U10_RS11835	ruvA	2456187..2456798 (-)	612	WP_000580323.1	Holliday junction branch migration protein RuvA	-
AB0U10_RS11840	yobI	2456937..2457002 (-)	66	WP_072093883.1	stress response small protein YobI	-
AB0U10_RS11845	yebB	2457073..2457675 (+)	603	WP_001024911.1	YebB family permuted papain-like enzyme	-
AB0U10_RS11850	ruvC	2457677..2458198 (-)	522	WP_001295503.1	crossover junction endodeoxyribonuclease RuvC	-
AB0U10_RS11855	yebC	2458233..2458973 (-)	741	WP_000907234.1	YebC/PmpR family DNA-binding transcriptional regulator	-
AB0U10_RS11860	nudB	2459002..2459454 (-)	453	WP_077249130.1	dihydroneopterin triphosphate diphosphatase	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37163.73 Da
• Isoelectric Point: 4.7818

>NTDB_id=916876 AB0U10_RS11830 WP_000568520.1 2455168..2456178(-) (ruvB) [Escherichia coli strain 72322051416_S37]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS

Nucleotide

• Length: 1011 bp

>NTDB_id=916876 AB0U10_RS11830 WP_000568520.1 2455168..2456178(-) (ruvB) [Escherichia coli strain 72322051416_S37]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.486	97.917	0.592
ruvB	Streptococcus pneumoniae TIGR4	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae R6	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae D39	58.934	94.94	0.56
ruvB	Synechocystis sp. PCC 6803	53.251	96.131	0.512
ruvB	Helicobacter pylori 26695	52.038	94.94	0.494