Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV30_RS15465 Genome accession   NZ_AP025460
Coordinates   3421741..3422853 (-) Length   370 a.a.
NCBI ID   WP_065678331.1    Uniprot ID   A0A1C3IJK4
Organism   Vibrio atlanticus strain CECT 7223     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3416741..3427853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS15435 hemF 3417299..3418216 (-) 918 WP_065678335.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV30_RS15440 - 3418236..3418793 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  OCV30_RS15445 purE 3418989..3419474 (+) 486 WP_065678334.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV30_RS15450 - 3419480..3420610 (+) 1131 WP_065678333.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV30_RS15455 - 3420679..3421248 (-) 570 WP_065678332.1 type I DNA topoisomerase -
  OCV30_RS15460 - 3421261..3421737 (-) 477 WP_009848094.1 DUF494 family protein -
  OCV30_RS15465 dprA 3421741..3422853 (-) 1113 WP_065678331.1 DNA-processing protein DprA Machinery gene
  OCV30_RS15470 - 3422850..3423941 (-) 1092 WP_065678330.1 LysM peptidoglycan-binding domain-containing protein -
  OCV30_RS15475 def 3424082..3424594 (+) 513 WP_004735769.1 peptide deformylase -
  OCV30_RS15480 fmt 3424633..3425580 (+) 948 WP_065678329.1 methionyl-tRNA formyltransferase -
  OCV30_RS15485 rsmB 3425700..3426980 (+) 1281 WP_017077320.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40136.96 Da        Isoelectric Point: 7.0590

>NTDB_id=91668 OCV30_RS15465 WP_065678331.1 3421741..3422853(-) (dprA) [Vibrio atlanticus strain CECT 7223]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQIAYLRDQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRKLADRICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91668 OCV30_RS15465 WP_065678331.1 3421741..3422853(-) (dprA) [Vibrio atlanticus strain CECT 7223]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAATTAGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCCCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGATCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTACTGAATGAGACCGCCTCCGCGCCGAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCAATGGTCGGCAGTCGTAATGCCAGCATCGAAGGGCTGCAGACAGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGTTGGGCATTGACGGTTACGCTCATGATGGT
GCTCTAGATAAAGGAGGAGAGACTTTCGCGGTTTTAGGTTCAGGTTTGGATTCCATTTACCCAGCGCGGCACAGAAAATT
AGCCGATAGAATCTGTGAAAATGGGGCGCTGATTTCAGAGTTTCGCCCAAACGCAAAACCACGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTCGTTGAAGCGGCTGAGAAGAGTGGCTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGCCGCGGAGGTAA
TAGCTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATCGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCTAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IJK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

58.556

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Legionella pneumophila strain ERS1305867

43.956

98.378

0.432
  dprA Neisseria meningitidis MC58

38.791

100

0.416
  dprA Neisseria meningitidis strain C311

38.791

100

0.416
  dprA Haemophilus influenzae Rd KW20

44.807

91.081

0.408
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403
  dprA Acinetobacter baumannii D1279779

41.818

89.189

0.373
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368

Multiple sequence alignment