Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU36_RS13800 Genome accession   NZ_AP025458
Coordinates   3040146..3041258 (-) Length   370 a.a.
NCBI ID   WP_261838444.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3035146..3046258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS13770 hemF 3035668..3036585 (-) 918 WP_261838438.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU36_RS13775 - 3036605..3037162 (-) 558 WP_261838439.1 L-threonylcarbamoyladenylate synthase -
  OCU36_RS13780 purE 3037358..3037843 (+) 486 WP_261838440.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU36_RS13785 - 3037849..3038979 (+) 1131 WP_261838441.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU36_RS13790 - 3039084..3039653 (-) 570 WP_261838442.1 type I DNA topoisomerase -
  OCU36_RS13795 - 3039666..3040139 (-) 474 WP_261838443.1 DUF494 family protein -
  OCU36_RS13800 dprA 3040146..3041258 (-) 1113 WP_261838444.1 DNA-processing protein DprA Machinery gene
  OCU36_RS13805 - 3041255..3042346 (-) 1092 WP_261838445.1 LysM peptidoglycan-binding domain-containing protein -
  OCU36_RS13810 def 3042487..3043002 (+) 516 WP_261838446.1 peptide deformylase -
  OCU36_RS13815 fmt 3043038..3043985 (+) 948 WP_261838447.1 methionyl-tRNA formyltransferase -
  OCU36_RS13820 rsmB 3044075..3045355 (+) 1281 WP_261839743.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40138.82 Da        Isoelectric Point: 6.5728

>NTDB_id=91623 OCU36_RS13800 WP_261838444.1 3040146..3041258(-) (dprA) [Vibrio artabrorum strain CECT 7226]
MNEQPLIAWLSLSFVPQLGGKRLSRLLSVDSPSNIVGYSSQQLQALGLSAKQISYLREQAPREVEACLEWQARQPNHHII
TANCSHYPKLLNEIASAPSVLFVKGHIEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALEKGGETFAVLGAGLDSIYPARHRDLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKTGACLVQSAQDVLVEIKSLLDWSIDQQPSLFESTSSESENEQLPFPQLF
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKVRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91623 OCU36_RS13800 WP_261838444.1 3040146..3041258(-) (dprA) [Vibrio artabrorum strain CECT 7226]
GTGAATGAGCAACCGCTGATCGCTTGGCTCTCCCTGAGCTTTGTTCCGCAACTTGGGGGTAAGCGTCTTTCTCGTCTATT
GAGTGTTGATTCCCCATCGAATATTGTTGGCTACTCCAGCCAACAGCTGCAAGCGCTTGGTTTGTCAGCCAAGCAAATTT
CCTATCTAAGGGAGCAAGCCCCAAGAGAAGTAGAGGCGTGCCTAGAGTGGCAAGCAAGACAACCTAACCACCACATCATT
ACCGCGAATTGCTCACATTACCCCAAACTGCTGAACGAGATAGCCTCTGCACCAAGCGTGCTTTTCGTTAAGGGGCATAT
TGAAAAACTGATTGAGCCTCAAATCGCGATGGTTGGCAGCCGTAATGCCAGTCTCGAAGGGCTGCAAACGGCGAAGTCTT
TTGCCAAAGAGTTCGTGCAAAACGGCTTGATTGTCACCAGTGGCCTAGCGCTCGGTATCGATGGCTACGCTCATGATGGG
GCTCTGGAAAAAGGTGGCGAAACTTTTGCCGTATTGGGGGCGGGTTTAGATTCCATCTACCCGGCACGACATAGAGATCT
AGCGGATAGAATTTGTGAGAATGGCGCGCTGATCTCAGAGTTCCGTCCAAGCGCTAAACCTCGACCTGAACATTTCCCTC
GCCGTAACCGTATTATCAGTGGGTTGTCTTTGGGGACTCTCGTCGTTGAGGCGGCTGAGAAAAGCGGTTCTCTGATTACC
GCTCGCTATGCCATGGAGCAAGGCCGCGAAGTGTTTGCCCTTCCTGGTTCGATTCATAGCCCAACCAGTCGCGGAGGCAA
TAGCTTAATTAAAACTGGCGCTTGTTTGGTGCAGAGTGCTCAAGATGTGTTGGTTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAGCCCAGTTTGTTCGAATCGACGTCGAGTGAGAGCGAAAATGAACAATTGCCATTTCCACAGCTGTTC
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGTGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.209

99.73

0.67
  dprA Vibrio cholerae strain A1552

57.487

100

0.581
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.476
  dprA Legionella pneumophila strain ERS1305867

44.809

98.919

0.443
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Haemophilus influenzae Rd KW20

42.814

90.27

0.386
  dprA Acinetobacter baumannii strain A118

40.116

92.973

0.373
  dprA Acinetobacter baumannii D1279779

39.826

92.973

0.37

Multiple sequence alignment