Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U6038_RS01635 Genome accession   NZ_CP140715
Coordinates   336779..338005 (-) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331779..343005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS01610 (U6038_01610) - 333131..333454 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  U6038_RS01615 (U6038_01615) rlmB 333598..334347 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  U6038_RS01620 (U6038_01620) - 334380..335297 (+) 918 WP_205667275.1 DMT family transporter -
  U6038_RS01625 (U6038_01625) coaE 335311..335910 (-) 600 WP_333654876.1 dephospho-CoA kinase -
  U6038_RS01630 (U6038_01630) pilD 335919..336779 (-) 861 WP_058868793.1 prepilin peptidase Machinery gene
  U6038_RS01635 (U6038_01635) pilC 336779..338005 (-) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  U6038_RS01640 (U6038_01640) pilB 338036..339748 (-) 1713 WP_333654880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U6038_RS01645 (U6038_01645) tpiA 340028..340819 (+) 792 WP_333654883.1 triose-phosphate isomerase -
  U6038_RS01650 (U6038_01650) secG 340833..341162 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  U6038_RS01680 (U6038_01680) rimP 342116..342640 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=915109 U6038_RS01635 WP_010325767.1 336779..338005(-) (pilC) [Acinetobacter johnsonii strain FAHZZU3110hy]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=915109 U6038_RS01635 WP_010325767.1 336779..338005(-) (pilC) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCTCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTCGTCCCCGTTTTCCAAGAACTATTTAGTTCCTTTGGTGCAGACTTACCCGCATTCA
CCCAAATGGTGGTAAATATGTCCGAATGGATGCAGAAATACTGGTTCATTTTAATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAACGCAGTAAAAAGTTTCGTGACATGTTGGATAAAGCTGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTACAAAGCGATTATCGCACGCTATAGCCGTACGCTGTCTACCACCTTTGCTGCGGGTGTACCTTTAATTG
ATGCCCTCGAGTCTACAGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGACAACAACTTCAATTCGCAATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365