NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	U6038_RS01630	Genome accession	NZ_CP140715
Coordinates	335919..336779 (-)	Length	286 a.a.
NCBI ID	WP_058868793.1	Uniprot ID	-
Organism	Acinetobacter johnsonii strain FAHZZU3110hy
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 330919..341779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6038_RS01605 (U6038_01605)	recN	331077..332738 (-)	1662	WP_333654872.1	DNA repair protein RecN	-
U6038_RS01610 (U6038_01610)	-	333131..333454 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
U6038_RS01615 (U6038_01615)	rlmB	333598..334347 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
U6038_RS01620 (U6038_01620)	-	334380..335297 (+)	918	WP_205667275.1	DMT family transporter	-
U6038_RS01625 (U6038_01625)	coaE	335311..335910 (-)	600	WP_333654876.1	dephospho-CoA kinase	-
U6038_RS01630 (U6038_01630)	pilD	335919..336779 (-)	861	WP_058868793.1	prepilin peptidase	Machinery gene
U6038_RS01635 (U6038_01635)	pilC	336779..338005 (-)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
U6038_RS01640 (U6038_01640)	pilB	338036..339748 (-)	1713	WP_333654880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U6038_RS01645 (U6038_01645)	tpiA	340028..340819 (+)	792	WP_333654883.1	triose-phosphate isomerase	-
U6038_RS01650 (U6038_01650)	secG	340833..341162 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32001.45 Da Isoelectric Point: 8.0564

                                >NTDB_id=915108 U6038_RS01630 WP_058868793.1 335919..336779(-) (pilD) [Acinetobacter johnsonii strain FAHZZU3110hy]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA

IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=915108 U6038_RS01630 WP_058868793.1 335919..336779(-) (pilD) [Acinetobacter johnsonii strain FAHZZU3110hy]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG

TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC

ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG

TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG

TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTCAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT

CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434

Detailed information NTG0915108