Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TQH59_RS01605 Genome accession   NZ_CP140708
Coordinates   326622..327848 (-) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321622..332848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS01580 (TQH59_01580) - 322977..323300 (+) 324 WP_125273379.1 pyrimidine/purine nucleoside phosphorylase -
  TQH59_RS01585 (TQH59_01585) rlmB 323443..324192 (+) 750 WP_004978746.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  TQH59_RS01590 (TQH59_01590) - 324224..325141 (+) 918 WP_171428537.1 DMT family transporter -
  TQH59_RS01595 (TQH59_01595) coaE 325156..325755 (-) 600 WP_125273378.1 dephospho-CoA kinase -
  TQH59_RS01600 (TQH59_01600) pilD 325762..326622 (-) 861 WP_125273377.1 prepilin peptidase Machinery gene
  TQH59_RS01605 (TQH59_01605) pilC 326622..327848 (-) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  TQH59_RS01610 (TQH59_01610) pilB 327879..329597 (-) 1719 WP_333641083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TQH59_RS01615 (TQH59_01615) tpiA 329877..330668 (+) 792 WP_333641085.1 triose-phosphate isomerase -
  TQH59_RS01620 (TQH59_01620) secG 330682..331011 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  TQH59_RS01650 (TQH59_01650) rimP 331965..332489 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=915068 TQH59_RS01605 WP_010325767.1 326622..327848(-) (pilC) [Acinetobacter johnsonii strain FAHZZU3567hy]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=915068 TQH59_RS01605 WP_010325767.1 326622..327848(-) (pilC) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATACCCTCAATATTTTGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATTGT
GACGATTATTTTGATGGTCAAAGTCGTCCCCGTTTTCCAAGAACTATTTAGTTCCTTTGGTGCAGACTTACCCGCATTCA
CCCAAATGGTGGTAAATATGTCCGAATGGATGCAGAAATACTGGTTCATTTTAATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAACGCAGTAAAAAGTTTCGTGACATGTTGGATAAAGCCGCGCTGAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACGCTGTCTACCACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTAGAGTCTACAGCAGGCGCAACCAACAATGTTGTGTACGAAGAAGCTGTGATGAAGATTCGTGAAGATGTCGCA
ACAGGGCAACAGCTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTGGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAATGAAGTCGATAATGCGGTAGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGTCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365