Detailed information NTG0915067

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TQH59_RS01600
• Genome accession: NZ_CP140708
• Coordinates: 325762..326622 (-)
• Length: 286 a.a.
• NCBI ID: WP_125273377.1
• Uniprot ID: A0A3R9GA68
• Organism: Acinetobacter johnsonii strain FAHZZU3567hy
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 320762..331622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TQH59_RS01575 (TQH59_01575)	recN	320923..322584 (-)	1662	WP_333641078.1	DNA repair protein RecN	-
TQH59_RS01580 (TQH59_01580)	-	322977..323300 (+)	324	WP_125273379.1	pyrimidine/purine nucleoside phosphorylase	-
TQH59_RS01585 (TQH59_01585)	rlmB	323443..324192 (+)	750	WP_004978746.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
TQH59_RS01590 (TQH59_01590)	-	324224..325141 (+)	918	WP_171428537.1	DMT family transporter	-
TQH59_RS01595 (TQH59_01595)	coaE	325156..325755 (-)	600	WP_125273378.1	dephospho-CoA kinase	-
TQH59_RS01600 (TQH59_01600)	pilD	325762..326622 (-)	861	WP_125273377.1	prepilin peptidase	Machinery gene
TQH59_RS01605 (TQH59_01605)	pilC	326622..327848 (-)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
TQH59_RS01610 (TQH59_01610)	pilB	327879..329597 (-)	1719	WP_333641083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
TQH59_RS01615 (TQH59_01615)	tpiA	329877..330668 (+)	792	WP_333641085.1	triose-phosphate isomerase	-
TQH59_RS01620 (TQH59_01620)	secG	330682..331011 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31990.37 Da
• Isoelectric Point: 8.0620

>NTDB_id=915067 TQH59_RS01600 WP_125273377.1 325762..326622(-) (pilD) [Acinetobacter johnsonii strain FAHZZU3567hy]
MQEIISYIINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLGGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLFTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=915067 TQH59_RS01600 WP_125273377.1 325762..326622(-) (pilD) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCAAGAAATAATTTCCTATATTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAGCTCACATTGAGTAAGCCTGCCTCAACCTGTCCCAAATGTAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCAGTATTTGGGCCAACAATCCAAA
TGCTGTTCGGTCTCGTGCTCACTTATATTTTAATCGCCTTAACATTTATTGATTTTGACACTCAGCTTTTACCTGATCGT
TATACCCTCACCCTTGGAGGTCTAGGTTTAGGGGTCAATAGTTATGCGATTTACACCACGCCAACAGCGGCCATTTGGGG
CTATATCATTGGTTTCTTATGCTTATGGATTGTCTACTATCTGTTTAAACTCTTCACAGGCAAGGAAGGTATGGGTTATG
GTGATTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTAATTGTGCTACTTTCTTCTTTC
GTAGGCGCCATCATCGGCATCATCCTGCTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGCGAACAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A3R9GA68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Acinetobacter nosocomialis M2	78.596	99.65	0.783
pilD	Vibrio cholerae strain A1552	54.478	93.706	0.51
pilD	Vibrio campbellii strain DS40M4	51.301	94.056	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437