Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U3Q39_RS04790 Genome accession   NZ_CP140298
Coordinates   1006143..1007360 (+) Length   405 a.a.
NCBI ID   WP_095460666.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain MJL19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1001143..1012360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3Q39_RS04770 (U3Q39_004770) - 1001545..1002171 (-) 627 WP_170799082.1 hypothetical protein -
  U3Q39_RS04775 (U3Q39_004775) - 1002383..1003183 (-) 801 WP_241694827.1 hypothetical protein -
  U3Q39_RS04780 (U3Q39_004780) pilA 1003816..1004001 (-) 186 WP_170799083.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  U3Q39_RS04785 (U3Q39_004785) pilB 1004437..1006140 (+) 1704 WP_170799084.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U3Q39_RS04790 (U3Q39_004790) pilC 1006143..1007360 (+) 1218 WP_095460666.1 type II secretion system F family protein Machinery gene
  U3Q39_RS04795 (U3Q39_004795) pilD 1007366..1008232 (+) 867 WP_170799085.1 prepilin peptidase Machinery gene
  U3Q39_RS04800 (U3Q39_004800) coaE 1008364..1008972 (+) 609 WP_170799086.1 dephospho-CoA kinase -
  U3Q39_RS04805 (U3Q39_004805) yacG 1008969..1009166 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  U3Q39_RS04810 (U3Q39_004810) - 1009179..1009859 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  U3Q39_RS04815 (U3Q39_004815) - 1009916..1010956 (-) 1041 WP_170799087.1 NADP(H)-dependent aldo-keto reductase -
  U3Q39_RS04820 (U3Q39_004820) rplM 1011371..1011799 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  U3Q39_RS04825 (U3Q39_004825) rpsI 1011815..1012207 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44175.98 Da        Isoelectric Point: 9.9418

>NTDB_id=913590 U3Q39_RS04790 WP_095460666.1 1006143..1007360(+) (pilC) [Stutzerimonas stutzeri strain MJL19]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKSASLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAQLPAFTMMVVGLSRWLQEWWYLVAGALFAAAFLFK
HTYKRSEKFRDALDRLLLKAPIVGDILYKSVVARYARTLSTTFSAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPSMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIVAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=913590 U3Q39_RS04790 WP_095460666.1 1006143..1007360(+) (pilC) [Stutzerimonas stutzeri strain MJL19]
ATGGCGGAAAAAGCGTTAAAAACCAGTGTTTTCACCTGGGAAGGCACCGACCGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCGGGCCAGAGCCCGGCACTGATCAAGGCGCAACTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGAGCG
CTTCGCTGTTCGGCGCGGGCAAAAAAATTAAACCGATGGATATCGCCTTGTTTACTCGGCAAATGGCCACTATGATGAAG
GCGGGTGTGCCGTTGCTGCAGTCGTTCGACATCATTGGCGAGGGCTTCGATAATCCGAACATGCGTAAGCTGGTCGATGA
GATTAAGCAAGAAGTGGCAGCAGGCAATAGTTTTGCTGGCTCGCTACGCAAAAAGCCGCAGTATTTCGATGACCTGTATT
GCAACTTGGTCGAGTCCGGAGAACAGTCCGGTGCGCTCGAAACGTTGCTGGACCGCGTCGCTACTTACAAGGAAAAAACC
GAGGCGCTCAAGGCTAAGATCAAGAAGGCAATGACCTACCCGATTGCGGTCATAGTTGTTGCCATCATCGTATCAGCTAT
CTTGCTGATCAAGGTGGTGCCGCAGTTCGAAAGCGTATTCCAAGGCTTCGGGGCACAGTTGCCCGCCTTTACGATGATGG
TGGTGGGTCTATCTCGATGGCTGCAAGAGTGGTGGTACTTAGTAGCTGGAGCGCTTTTCGCGGCGGCGTTCCTTTTCAAG
CACACCTATAAGAGGTCCGAAAAATTTCGCGATGCGCTTGATAGGTTGTTGCTTAAGGCTCCTATCGTTGGTGATATCTT
GTACAAATCTGTCGTCGCGCGTTATGCGCGTACGTTATCGACTACCTTTTCCGCTGGTGTGCCACTTGTAGATGCTCTGG
ATTCAGTTGCGGGGGCCACGGGTAATGTGGTTTTCCGCAATGCGGTTGCGAAAATTCGTACCGATGTGTCATCTGGCGTG
CAGCTGAACTTTTCGATGCGCACGACAGGTATTTTCCCGTCGATGGCCATTCAAATGACGGCCATCGGCGAAGAATCCGG
AGCCCTAGATGAGATGCTCGACAAGCTGGCCAGTTTCTACGAGGCAGAGGTTGATAATATGGTGGACAACCTCACCACCT
TGATGGAACCGCTCATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCGTCGCTATGTACCTTCCGATATTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.222

100

0.822
  pilC Acinetobacter baylyi ADP1

62.315

100

0.625
  pilC Acinetobacter baumannii D1279779

61.728

100

0.617
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

45.274

99.259

0.449
  pilG Neisseria meningitidis 44/76-A

45.274

99.259

0.449
  pilC Vibrio cholerae strain A1552

42.963

100

0.43
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4