Detailed information NTG0913591

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U3Q39_RS04795
• Genome accession: NZ_CP140298
• Coordinates: 1007366..1008232 (+)
• Length: 288 a.a.
• NCBI ID: WP_170799085.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain MJL19
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1002366..1013232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U3Q39_RS04775 (U3Q39_004775)	-	1002383..1003183 (-)	801	WP_241694827.1	hypothetical protein	-
U3Q39_RS04780 (U3Q39_004780)	pilA	1003816..1004001 (-)	186	WP_170799083.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
U3Q39_RS04785 (U3Q39_004785)	pilB	1004437..1006140 (+)	1704	WP_170799084.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U3Q39_RS04790 (U3Q39_004790)	pilC	1006143..1007360 (+)	1218	WP_095460666.1	type II secretion system F family protein	Machinery gene
U3Q39_RS04795 (U3Q39_004795)	pilD	1007366..1008232 (+)	867	WP_170799085.1	prepilin peptidase	Machinery gene
U3Q39_RS04800 (U3Q39_004800)	coaE	1008364..1008972 (+)	609	WP_170799086.1	dephospho-CoA kinase	-
U3Q39_RS04805 (U3Q39_004805)	yacG	1008969..1009166 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
U3Q39_RS04810 (U3Q39_004810)	-	1009179..1009859 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
U3Q39_RS04815 (U3Q39_004815)	-	1009916..1010956 (-)	1041	WP_170799087.1	NADP(H)-dependent aldo-keto reductase	-
U3Q39_RS04820 (U3Q39_004820)	rplM	1011371..1011799 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
U3Q39_RS04825 (U3Q39_004825)	rpsI	1011815..1012207 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
U3Q39_RS04830 (U3Q39_004830)	petA	1012462..1013055 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32140.12 Da
• Isoelectric Point: 7.2758

>NTDB_id=913591 U3Q39_RS04795 WP_170799085.1 1007366..1008232(+) (pilD) [Stutzerimonas stutzeri strain MJL19]
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSFCQAPISCRYPLVELACGVLSGYVAWHFGFSWQTGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
LLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=913591 U3Q39_RS04795 WP_170799085.1 1007366..1008232(+) (pilD) [Stutzerimonas stutzeri strain MJL19]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCTTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTTTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGACAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTATGGTTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGCTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGGTCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTAGTCGGCGCC
TTGCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGTAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	58.029	95.139	0.552
pilD	Vibrio cholerae strain A1552	57.455	95.486	0.549
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497
pilD	Neisseria gonorrhoeae MS11	53.612	91.319	0.49