Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U0040_RS14875 Genome accession   NZ_CP140003
Coordinates   3002777..3004003 (+) Length   408 a.a.
NCBI ID   WP_114837768.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2997777..3009003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS14830 (U0040_14825) rimP 2998143..2998667 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  U0040_RS14860 (U0040_14855) secG 2999620..2999949 (-) 330 WP_058868796.1 preprotein translocase subunit SecG -
  U0040_RS14865 (U0040_14860) tpiA 2999963..3000754 (-) 792 WP_114837770.1 triose-phosphate isomerase -
  U0040_RS14870 (U0040_14865) pilB 3001034..3002746 (+) 1713 WP_114837769.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U0040_RS14875 (U0040_14870) pilC 3002777..3004003 (+) 1227 WP_114837768.1 type II secretion system F family protein Machinery gene
  U0040_RS14880 (U0040_14875) pilD 3004003..3004863 (+) 861 WP_114837767.1 prepilin peptidase Machinery gene
  U0040_RS14885 (U0040_14880) coaE 3004872..3005471 (+) 600 WP_114837766.1 dephospho-CoA kinase -
  U0040_RS14890 (U0040_14885) - 3005485..3006402 (-) 918 WP_171355094.1 DMT family transporter -
  U0040_RS14895 (U0040_14890) rlmB 3006435..3007184 (-) 750 WP_114837765.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  U0040_RS14900 (U0040_14895) - 3007327..3007650 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44800.21 Da        Isoelectric Point: 9.7992

>NTDB_id=912362 U0040_RS14875 WP_114837768.1 3002777..3004003(+) (pilC) [Acinetobacter johnsonii strain HAMBI_0097]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQIVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=912362 U0040_RS14875 WP_114837768.1 3002777..3004003(+) (pilC) [Acinetobacter johnsonii strain HAMBI_0097]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTAGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTCGTTGTGGTTGCGGTGATCGT
GACCATTATTTTGATGGTCAAAGTTGTCCCAGTGTTCCAAGATTTATTCAGCTCCTTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGTTGGATAAAGCTGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACCCTGTCTACCACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTCCCATCAATGGCAGTACAAATTGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGCT
TAACAGCAATGATGGAACCTCTGATCATGGCAGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.658

98.284

0.36