NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	U0040_RS14880	Genome accession	NZ_CP140003
Coordinates	3004003..3004863 (+)	Length	286 a.a.
NCBI ID	WP_114837767.1	Uniprot ID	-
Organism	Acinetobacter johnsonii strain HAMBI_0097
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2999003..3009863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0040_RS14860 (U0040_14855)	secG	2999620..2999949 (-)	330	WP_058868796.1	preprotein translocase subunit SecG	-
U0040_RS14865 (U0040_14860)	tpiA	2999963..3000754 (-)	792	WP_114837770.1	triose-phosphate isomerase	-
U0040_RS14870 (U0040_14865)	pilB	3001034..3002746 (+)	1713	WP_114837769.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U0040_RS14875 (U0040_14870)	pilC	3002777..3004003 (+)	1227	WP_114837768.1	type II secretion system F family protein	Machinery gene
U0040_RS14880 (U0040_14875)	pilD	3004003..3004863 (+)	861	WP_114837767.1	prepilin peptidase	Machinery gene
U0040_RS14885 (U0040_14880)	coaE	3004872..3005471 (+)	600	WP_114837766.1	dephospho-CoA kinase	-
U0040_RS14890 (U0040_14885)	-	3005485..3006402 (-)	918	WP_171355094.1	DMT family transporter	-
U0040_RS14895 (U0040_14890)	rlmB	3006435..3007184 (-)	750	WP_114837765.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
U0040_RS14900 (U0040_14895)	-	3007327..3007650 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
U0040_RS14905 (U0040_14900)	recN	3008041..3009702 (+)	1662	WP_005400944.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32020.54 Da Isoelectric Point: 8.2601

                                >NTDB_id=912363 U0040_RS14880 WP_114837767.1 3004003..3004863(+) (pilD) [Acinetobacter johnsonii strain HAMBI_0097]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMVQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA

IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGY

Nucleotide

Download Length: 861 bp

                                >NTDB_id=912363 U0040_RS14880 WP_114837767.1 3004003..3004863(+) (pilD) [Acinetobacter johnsonii strain HAMBI_0097]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTGTATTTTGCCGTTGGAGTTTTTAGTTTGTGCATTGG

TAGTTTCCTGAATGTAGTGATCTATCGCACTCCAAAAATGATGGTACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC

ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG

TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG

TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT

CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Acinetobacter nosocomialis M2	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	53.184	93.357	0.497
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	45.055	95.455	0.43

Detailed information NTG0912363