Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U0039_RS18660 Genome accession   NZ_CP139964
Coordinates   3945181..3946440 (+) Length   419 a.a.
NCBI ID   WP_024956770.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain HAMBI_2659     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3940181..3951440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0039_RS18640 (U0039_18635) pilR 3940375..3941748 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  U0039_RS18645 (U0039_18640) pilB 3941874..3943607 (-) 1734 WP_024956773.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U0039_RS18650 (U0039_18645) pilA/pilAI 3943831..3944238 (-) 408 WP_024956772.1 pilin Machinery gene
  U0039_RS18655 (U0039_18650) - 3944391..3944828 (-) 438 WP_024956771.1 pilin -
  U0039_RS18660 (U0039_18655) pilC 3945181..3946440 (+) 1260 WP_024956770.1 type II secretion system F family protein Machinery gene
  U0039_RS18665 (U0039_18660) - 3946448..3947311 (+) 864 WP_012481100.1 A24 family peptidase -
  U0039_RS18670 (U0039_18665) coaE 3947323..3947934 (+) 612 WP_024956769.1 dephospho-CoA kinase -
  U0039_RS18675 (U0039_18670) - 3948194..3948580 (-) 387 WP_024956768.1 hypothetical protein -
  U0039_RS18680 (U0039_18675) - 3949075..3950442 (-) 1368 WP_032963415.1 HAMP domain-containing sensor histidine kinase -
  U0039_RS18685 (U0039_18680) - 3950405..3951082 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45920.36 Da        Isoelectric Point: 10.1071

>NTDB_id=912035 U0039_RS18660 WP_024956770.1 3945181..3946440(+) (pilC) [Stenotrophomonas maltophilia strain HAMBI_2659]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=912035 U0039_RS18660 WP_024956770.1 3945181..3946440(+) (pilC) [Stenotrophomonas maltophilia strain HAMBI_2659]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCGAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CAGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

94.511

0.52
  pilC Acinetobacter baylyi ADP1

51.351

97.136

0.499
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baumannii D1279779

49.877

97.136

0.484
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

37.811

95.943

0.363