Detailed information NTG0911510

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: U0449_RS06940
• Genome accession: NZ_CP139862
• Coordinates: 1361538..1361933 (+)
• Length: 131 a.a.
• NCBI ID: WP_000282443.1
• Uniprot ID: A0A0E8PDH7
• Organism: Streptococcus pneumoniae strain 05H0020-2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1356538..1366933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0449_RS06890	-	1356608..1356970 (+)	363	WP_000078804.1	DUF2200 domain-containing protein	-
U0449_RS06895	-	1356967..1357470 (+)	504	WP_000800943.1	phosphatase PAP2 family protein	-
U0449_RS06900	-	1357584..1358030 (+)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
U0449_RS06905	-	1358035..1358709 (+)	675	WP_000725720.1	LiaF transmembrane domain-containing protein	-
U0449_RS06910	-	1358955..1359152 (+)	198	Protein_1338	N-acetylmuramoyl-L-alanine amidase family protein	-
U0449_RS06915	-	1359177..1359308 (-)	132	WP_044792126.1	hypothetical protein	-
U0449_RS06920	-	1359402..1359701 (+)	300	WP_050218994.1	DUF4651 domain-containing protein	-
U0449_RS06925	-	1359698..1360015 (+)	318	WP_000615767.1	thioredoxin family protein	-
U0449_RS06930	ytpR	1360031..1360657 (+)	627	WP_000578289.1	YtpR family tRNA-binding protein	-
U0449_RS06935	-	1360699..1361460 (+)	762	WP_050215706.1	SDR family NAD(P)-dependent oxidoreductase	-
U0449_RS06940	ssbB/cilA	1361538..1361933 (+)	396	WP_000282443.1	single-stranded DNA-binding protein	Machinery gene
U0449_RS06945	groES	1362203..1362487 (+)	285	WP_000917339.1	co-chaperone GroES	-
U0449_RS06950	groL	1362503..1364125 (+)	1623	WP_000031585.1	chaperonin GroEL	-
U0449_RS06955	-	1364224..1365530 (-)	1307	Protein_1347	transposase	-
U0449_RS06960	-	1365690..1365896 (+)	207	WP_000775827.1	transcriptional regulator	-
U0449_RS06965	-	1366256..1366789 (-)	534	WP_000775321.1	DUF402 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14935.91 Da
• Isoelectric Point: 5.9409

>NTDB_id=911510 U0449_RS06940 WP_000282443.1 1361538..1361933(+) (ssbB/cilA) [Streptococcus pneumoniae strain 05H0020-2]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=911510 U0449_RS06940 WP_000282443.1 1361538..1361933(+) (ssbB/cilA) [Streptococcus pneumoniae strain 05H0020-2]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGGGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A0E8PDH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405