Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SMG00_RS05110 Genome accession   NZ_CP139417
Coordinates   1101723..1102943 (+) Length   406 a.a.
NCBI ID   WP_019405597.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain H46     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096723..1107943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMG00_RS05085 - 1096897..1097667 (-) 771 WP_279647686.1 hypothetical protein -
  SMG00_RS05090 - 1097735..1098535 (-) 801 WP_279647685.1 ABC transporter permease -
  SMG00_RS22055 - 1098771..1098914 (-) 144 WP_407834998.1 Tfp structural protein -
  SMG00_RS05095 - 1098999..1099442 (-) 444 WP_279647683.1 hypothetical protein -
  SMG00_RS05100 pilA 1099463..1099648 (-) 186 WP_279647682.1 type IV pilin protein Machinery gene
  SMG00_RS05105 pilB 1100017..1101720 (+) 1704 WP_279647681.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SMG00_RS05110 pilC 1101723..1102943 (+) 1221 WP_019405597.1 type II secretion system F family protein Machinery gene
  SMG00_RS05115 pilD 1102947..1103813 (+) 867 WP_320893267.1 A24 family peptidase Machinery gene
  SMG00_RS05120 coaE 1103945..1104553 (+) 609 WP_080940987.1 dephospho-CoA kinase -
  SMG00_RS05125 yacG 1104550..1104747 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  SMG00_RS05130 - 1104760..1105440 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  SMG00_RS05135 - 1105497..1106537 (-) 1041 WP_320893268.1 NADP(H)-dependent aldo-keto reductase -
  SMG00_RS05140 rplM 1106958..1107386 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  SMG00_RS05145 rpsI 1107402..1107794 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44571.54 Da        Isoelectric Point: 9.8649

>NTDB_id=909432 SMG00_RS05110 WP_019405597.1 1101723..1102943(+) (pilC) [Stutzerimonas stutzeri strain H46]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAGSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTMMVVQLSRWLQEWWYIVFFALFITAFLFK
HAYKRSEKFRDSLDRLMLKLPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPTMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=909432 SMG00_RS05110 WP_019405597.1 1101723..1102943(+) (pilC) [Stutzerimonas stutzeri strain H46]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGACAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGTCAGAGCCCAGCACTGATCAAGGCGCAGCTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGGCCG
GTTCCTTGTTCGGGGCGGGCAAGAAAATCAAGCCGATGGACATTGCTCTGTTCACTCGGCAAATGGCCACCATGATGAAG
GCGGGTGTGCCGCTGCTGCAATCGTTCGACATTATTGGAGAGGGCTTCGATAACCCAAACATGCGCAAGTTGGTCGATGA
GATCAAGCAAGAGGTGGCGGCAGGCAACAGCTTTGCTGGCTCGCTGCGTAAGAAGCCGCAATATTTCGATGACTTGTATT
GCAACTTAGTCGAGTCTGGAGAGCAGTCCGGTGCGCTCGAAACCTTGCTGGACCGTGTTGCTACCTACAAGGAGAAAACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCGATGACCTATCCGATTGCGGTTATCGTGGTGGCAATCATCGTATCGGCGAT
TCTGTTGATTAAGGTGGTCCCTCAGTTCGAAAGTGTATTTCAGGGCTTCGGCGCGGAACTTCCAGCCTTCACCATGATGG
TGGTGCAGTTGTCACGTTGGCTGCAGGAGTGGTGGTATATTGTATTCTTTGCGTTATTCATTACTGCCTTTTTATTCAAG
CATGCATATAAGCGGTCGGAGAAATTTCGTGACTCTCTTGATCGCCTTATGCTCAAGCTGCCGATCGTTGGTGACATTCT
CTACAAGTCTGTAGTTGCGCGATATGCTCGCACATTGTCCACGACATTCGCGGCTGGTGTGCCCTTGGTTGATGCGTTGG
ACTCGGTGGCAGGTGCCACGGGCAACGTCGTGTTCCGCAATGCAGTAGCGAAGATCCGTACGGACGTATCGTCTGGTGTG
CAGCTCAATTTCTCCATGCGCACGACCGGCATTTTTCCCACCATGGCTATTCAAATGACCGCTATCGGCGAAGAGTCTGG
TGCGTTGGACGAAATGCTCGACAAACTGGCCAGTTTCTATGAGGCGGAGGTCGATAACATGGTGGATAACCTTACGACCC
TGATGGAGCCGCTGATCATGGCCGTGCTCGGGGTTCTGGTTGGTGGCTTGATCATCGCGATGTATCTGCCGATCTTCCAG
TTGGGTAGTGTGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

99.754

0.823
  pilC Acinetobacter baylyi ADP1

63.3

100

0.633
  pilC Acinetobacter baumannii D1279779

62.469

99.754

0.623
  pilC Legionella pneumophila strain ERS1305867

54.798

97.537

0.534
  pilG Neisseria gonorrhoeae MS11

45.025

99.015

0.446
  pilG Neisseria meningitidis 44/76-A

45.025

99.015

0.446
  pilC Vibrio cholerae strain A1552

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

41

98.522

0.404