Detailed information NTG0909433

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SMG00_RS05115
• Genome accession: NZ_CP139417
• Coordinates: 1102947..1103813 (+)
• Length: 288 a.a.
• NCBI ID: WP_320893267.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain H46
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1097947..1108813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMG00_RS22055	-	1098771..1098914 (-)	144	WP_407834998.1	Tfp structural protein	-
SMG00_RS05095	-	1098999..1099442 (-)	444	WP_279647683.1	hypothetical protein	-
SMG00_RS05100	pilA	1099463..1099648 (-)	186	WP_279647682.1	type IV pilin protein	Machinery gene
SMG00_RS05105	pilB	1100017..1101720 (+)	1704	WP_279647681.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SMG00_RS05110	pilC	1101723..1102943 (+)	1221	WP_019405597.1	type II secretion system F family protein	Machinery gene
SMG00_RS05115	pilD	1102947..1103813 (+)	867	WP_320893267.1	A24 family peptidase	Machinery gene
SMG00_RS05120	coaE	1103945..1104553 (+)	609	WP_080940987.1	dephospho-CoA kinase	-
SMG00_RS05125	yacG	1104550..1104747 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
SMG00_RS05130	-	1104760..1105440 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
SMG00_RS05135	-	1105497..1106537 (-)	1041	WP_320893268.1	NADP(H)-dependent aldo-keto reductase	-
SMG00_RS05140	rplM	1106958..1107386 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
SMG00_RS05145	rpsI	1107402..1107794 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
SMG00_RS05150	petA	1108050..1108643 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32126.10 Da
• Isoelectric Point: 7.2754

>NTDB_id=909433 SMG00_RS05115 WP_320893267.1 1102947..1103813(+) (pilD) [Stutzerimonas stutzeri strain H46]
MIYELMASHVLAFVLSAVVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=909433 SMG00_RS05115 WP_320893267.1 1102947..1103813(+) (pilD) [Stutzerimonas stutzeri strain H46]
ATGATCTACGAATTGATGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGTAGTGCTTGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTAGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTATGGTTAGGGTTGATTGCCAACAGCTTTGCTTTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGGATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCGTCGGTGGTCGGCGCC
GTGCTTGGCAGTATTCTGCTGAGAGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCCCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.69	98.611	0.559
pilD	Vibrio campbellii strain DS40M4	57.664	95.139	0.549
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497
pilD	Neisseria gonorrhoeae MS11	53.232	91.319	0.486