Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SM130_RS16985 Genome accession   NZ_CP139348
Coordinates   3688520..3689740 (-) Length   406 a.a.
NCBI ID   WP_102824890.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain KC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683520..3694740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS16950 (SM130_16950) rpsI 3683592..3683984 (-) 393 WP_003302797.1 30S ribosomal protein S9 -
  SM130_RS16955 (SM130_16955) rplM 3683999..3684427 (-) 429 WP_003281188.1 50S ribosomal protein L13 -
  SM130_RS16960 (SM130_16960) - 3684866..3685903 (+) 1038 WP_102824895.1 NADP(H)-dependent aldo-keto reductase -
  SM130_RS16965 (SM130_16965) - 3685968..3686648 (+) 681 WP_102824894.1 energy-coupling factor ABC transporter permease -
  SM130_RS16970 (SM130_16970) yacG 3686699..3686893 (-) 195 WP_102824893.1 DNA gyrase inhibitor YacG -
  SM130_RS16975 (SM130_16975) coaE 3686890..3687498 (-) 609 WP_102824892.1 dephospho-CoA kinase -
  SM130_RS16980 (SM130_16980) pilD 3687650..3688519 (-) 870 WP_102824891.1 A24 family peptidase Machinery gene
  SM130_RS16985 (SM130_16985) pilC 3688520..3689740 (-) 1221 WP_102824890.1 type II secretion system F family protein Machinery gene
  SM130_RS16990 (SM130_16990) pilB 3689743..3691446 (-) 1704 WP_102824889.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SM130_RS16995 (SM130_16995) pilA 3691815..3692000 (+) 186 WP_102824888.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  SM130_RS17000 (SM130_17000) - 3692015..3692461 (+) 447 WP_146029737.1 hypothetical protein -
  SM130_RS17005 (SM130_17005) - 3692532..3692711 (+) 180 WP_102824887.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SM130_RS17010 (SM130_17010) - 3693109..3693918 (+) 810 WP_219725296.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44270.08 Da        Isoelectric Point: 9.9329

>NTDB_id=909042 SM130_RS16985 WP_102824890.1 3688520..3689740(-) (pilC) [Stutzerimonas stutzeri strain KC]
MAEKALKTSVFAWEGTDRKGGKVKGELTGQSPALIKAQLRKQGINPLKVRKKAVSIFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTKMVVGLSRWLQEWWYLVAAALFAAAFVFK
HSYKRSEKFRDALDRILLKTPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRNDVSSGV
QLNFSMRTTGIFPSMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=909042 SM130_RS16985 WP_102824890.1 3688520..3689740(-) (pilC) [Stutzerimonas stutzeri strain KC]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCGCCTGGGAAGGCACCGATCGGAAAGGTGGCAAGGTCAAGGGGGAGCT
GACAGGTCAGAGCCCGGCACTGATCAAGGCACAGCTTCGCAAGCAAGGTATAAATCCGCTCAAGGTTCGTAAGAAAGCCG
TTTCGATATTCGGTGCGGGCAAGAAGATCAAGCCGATGGACATTGCCCTGTTCACCCGTCAGATGGCGACGATGATGAAG
GCAGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGTGAGGGCTTTGACAATCCCAACATGCGCAAGCTCGTTGATGA
GATCAAACAGGAAGTCGCGGCTGGTAACAGCTTTGCGGGCTCGCTGCGCAAGAAGCCTCAGTACTTCGATGATCTGTACT
GCAATTTGGTCGAGTCAGGTGAGCAATCTGGTGCCCTCGAAACGCTGTTGGATCGAGTGGCCACTTATAAGGAAAAGACC
GAGGCGCTCAAGGCGAAAATTAAAAAAGCTATGACTTACCCTATCGCGGTCATTGTGGTGGCGATCATTGTTTCTGCGAT
TCTGCTGATAAAGGTCGTTCCTCAATTTGAAAGCGTGTTTCAAGGGTTTGGTGCTGAGTTGCCAGCGTTCACCAAGATGG
TTGTCGGGCTGTCTCGGTGGTTGCAAGAGTGGTGGTATTTAGTGGCTGCAGCGCTCTTCGCAGCTGCATTTGTTTTCAAA
CACAGCTACAAGCGGTCGGAGAAGTTTCGTGATGCGCTTGACCGTATCCTGCTTAAAACGCCCATTGTGGGCGATATTCT
TTATAAGTCTGTAGTTGCGCGTTACGCGCGTACATTGTCTACGACATTTGCTGCAGGTGTTCCGCTGGTGGATGCGCTGG
ATTCCGTCGCAGGAGCGACTGGCAATGTGGTGTTTCGCAATGCAGTGGCGAAAATCCGCAACGACGTATCCTCCGGTGTG
CAGTTGAACTTCTCCATGCGTACGACCGGAATTTTCCCGTCTATGGCTATCCAGATGACAGCCATTGGTGAGGAGTCCGG
CGCTTTGGATGAAATGCTGGACAAGCTAGCAAGCTTCTACGAGGCTGAGGTCGATAATATGGTAGACAACCTCACCACGT
TGATGGAGCCGCTCATTATGGCTGTGCTAGGTGTGTTGGTTGGTGGCTTGATCATCGCTATGTACCTGCCGATCTTCCAG
TTGGGTAGTGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.222

99.754

0.82
  pilC Acinetobacter baylyi ADP1

63.054

100

0.631
  pilC Acinetobacter baumannii D1279779

62.469

99.754

0.623
  pilC Legionella pneumophila strain ERS1305867

53.283

97.537

0.52
  pilG Neisseria gonorrhoeae MS11

45.522

99.015

0.451
  pilG Neisseria meningitidis 44/76-A

45.522

99.015

0.451
  pilC Vibrio cholerae strain A1552

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

40.806

97.783

0.399