Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | SM130_RS16980 | Genome accession | NZ_CP139348 |
| Coordinates | 3687650..3688519 (-) | Length | 289 a.a. |
| NCBI ID | WP_102824891.1 | Uniprot ID | A0A2N8S1Q0 |
| Organism | Stutzerimonas stutzeri strain KC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3682650..3693519
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SM130_RS16945 (SM130_16945) | petA | 3682743..3683336 (-) | 594 | WP_102824896.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| SM130_RS16950 (SM130_16950) | rpsI | 3683592..3683984 (-) | 393 | WP_003302797.1 | 30S ribosomal protein S9 | - |
| SM130_RS16955 (SM130_16955) | rplM | 3683999..3684427 (-) | 429 | WP_003281188.1 | 50S ribosomal protein L13 | - |
| SM130_RS16960 (SM130_16960) | - | 3684866..3685903 (+) | 1038 | WP_102824895.1 | NADP(H)-dependent aldo-keto reductase | - |
| SM130_RS16965 (SM130_16965) | - | 3685968..3686648 (+) | 681 | WP_102824894.1 | energy-coupling factor ABC transporter permease | - |
| SM130_RS16970 (SM130_16970) | yacG | 3686699..3686893 (-) | 195 | WP_102824893.1 | DNA gyrase inhibitor YacG | - |
| SM130_RS16975 (SM130_16975) | coaE | 3686890..3687498 (-) | 609 | WP_102824892.1 | dephospho-CoA kinase | - |
| SM130_RS16980 (SM130_16980) | pilD | 3687650..3688519 (-) | 870 | WP_102824891.1 | A24 family peptidase | Machinery gene |
| SM130_RS16985 (SM130_16985) | pilC | 3688520..3689740 (-) | 1221 | WP_102824890.1 | type II secretion system F family protein | Machinery gene |
| SM130_RS16990 (SM130_16990) | pilB | 3689743..3691446 (-) | 1704 | WP_102824889.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SM130_RS16995 (SM130_16995) | pilA | 3691815..3692000 (+) | 186 | WP_102824888.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| SM130_RS17000 (SM130_17000) | - | 3692015..3692461 (+) | 447 | WP_146029737.1 | hypothetical protein | - |
| SM130_RS17005 (SM130_17005) | - | 3692532..3692711 (+) | 180 | WP_102824887.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32267.42 Da Isoelectric Point: 6.9302
>NTDB_id=909041 SM130_RS16980 WP_102824891.1 3687650..3688519(-) (pilD) [Stutzerimonas stutzeri strain KC]
MMILELLASHVLAFVLSAALLGLLVGSFLNVVIYRLPIMMQRDWRMQAREYLEYPPEPVGDKFNLLLPNSRCPHCSHEIR
SWENIPLVSWLALRGKCSACRAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNNFGLFVPLESALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRMQRAESNTPIPFGPYLAIAGWIALLWGDWITESYLQLARF
MMILELLASHVLAFVLSAALLGLLVGSFLNVVIYRLPIMMQRDWRMQAREYLEYPPEPVGDKFNLLLPNSRCPHCSHEIR
SWENIPLVSWLALRGKCSACRAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNNFGLFVPLESALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRMQRAESNTPIPFGPYLAIAGWIALLWGDWITESYLQLARF
Nucleotide
Download Length: 870 bp
>NTDB_id=909041 SM130_RS16980 WP_102824891.1 3687650..3688519(-) (pilD) [Stutzerimonas stutzeri strain KC]
TTGATGATCCTCGAACTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCTCTACTGGGCTTATTGGTCGGCAG
CTTTCTCAATGTCGTGATTTACCGTCTGCCGATCATGATGCAGCGCGATTGGCGCATGCAGGCGCGGGAGTATTTGGAGT
ATCCGCCGGAGCCCGTCGGTGACAAGTTTAATTTGCTATTGCCAAATTCACGCTGTCCGCACTGCAGTCATGAGATTCGT
TCTTGGGAAAATATCCCGCTAGTCAGTTGGTTGGCCCTGCGTGGAAAGTGCTCTGCCTGCCGGGCACCGATTAGCTGTCG
TTATCCACTCGTGGAGTTGGCTTGCGGGGTGTTGTCCGGCTATGTTGCCTGGCATTTCGGCTTCTCCTGGCAGGCCGGTG
CAATGCTGTTGCTCACGTGGGGCCTGTTGGCGATGAGCATGATTGATGTCGATCACCAGCTGTTGCCTGACGCGCTGGTG
CTGCCACTACTGTGGCTCGGTCTTATCCTCAATAATTTCGGTTTATTCGTGCCGCTGGAAAGTGCGCTCTGGGGCGCTGT
CGCGGGGTACCTGAGTCTCTGGTCGGTTTACTGGCTGTTCAAGTTGGTCACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCAATGCTCGGGGCGTGGGGTGGGTGGCAGGTGCTGCCGCTGACCATCCTTCTATCATCGGTAGTCGGT
GCAGTGCTTGGTAGCATCCTCCTGCGGATGCAGAGAGCAGAAAGCAATACGCCGATTCCATTTGGCCCTTATCTGGCTAT
CGCGGGCTGGATTGCATTGTTGTGGGGTGACTGGATTACCGAGAGCTATCTGCAACTGGCGCGCTTCTAA
TTGATGATCCTCGAACTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCTCTACTGGGCTTATTGGTCGGCAG
CTTTCTCAATGTCGTGATTTACCGTCTGCCGATCATGATGCAGCGCGATTGGCGCATGCAGGCGCGGGAGTATTTGGAGT
ATCCGCCGGAGCCCGTCGGTGACAAGTTTAATTTGCTATTGCCAAATTCACGCTGTCCGCACTGCAGTCATGAGATTCGT
TCTTGGGAAAATATCCCGCTAGTCAGTTGGTTGGCCCTGCGTGGAAAGTGCTCTGCCTGCCGGGCACCGATTAGCTGTCG
TTATCCACTCGTGGAGTTGGCTTGCGGGGTGTTGTCCGGCTATGTTGCCTGGCATTTCGGCTTCTCCTGGCAGGCCGGTG
CAATGCTGTTGCTCACGTGGGGCCTGTTGGCGATGAGCATGATTGATGTCGATCACCAGCTGTTGCCTGACGCGCTGGTG
CTGCCACTACTGTGGCTCGGTCTTATCCTCAATAATTTCGGTTTATTCGTGCCGCTGGAAAGTGCGCTCTGGGGCGCTGT
CGCGGGGTACCTGAGTCTCTGGTCGGTTTACTGGCTGTTCAAGTTGGTCACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCAATGCTCGGGGCGTGGGGTGGGTGGCAGGTGCTGCCGCTGACCATCCTTCTATCATCGGTAGTCGGT
GCAGTGCTTGGTAGCATCCTCCTGCGGATGCAGAGAGCAGAAAGCAATACGCCGATTCCATTTGGCCCTTATCTGGCTAT
CGCGGGCTGGATTGCATTGTTGTGGGGTGACTGGATTACCGAGAGCTATCTGCAACTGGCGCGCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
57.042 |
98.27 |
0.561 |
| pilD | Vibrio campbellii strain DS40M4 |
54.064 |
97.924 |
0.529 |
| pilD | Acinetobacter nosocomialis M2 |
51.408 |
98.27 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
51.056 |
98.27 |
0.502 |
| pilD | Neisseria gonorrhoeae MS11 |
53.257 |
90.311 |
0.481 |