Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SOI81_RS15775 Genome accession   NZ_CP139286
Coordinates   3349678..3350904 (+) Length   408 a.a.
NCBI ID   WP_320540986.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3344678..3355904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS15740 (SOI81_15740) rimP 3345348..3345872 (-) 525 WP_016142372.1 ribosome maturation factor RimP -
  SOI81_RS15760 (SOI81_15760) secG 3346510..3346839 (-) 330 WP_016142373.1 preprotein translocase subunit SecG -
  SOI81_RS15765 (SOI81_15765) tpiA 3346852..3347646 (-) 795 WP_016142374.1 triose-phosphate isomerase -
  SOI81_RS15770 (SOI81_15770) pilB 3347938..3349650 (+) 1713 WP_320540985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SOI81_RS15775 (SOI81_15775) pilC 3349678..3350904 (+) 1227 WP_320540986.1 type II secretion system F family protein Machinery gene
  SOI81_RS15780 (SOI81_15780) pilD 3350904..3351764 (+) 861 WP_320540987.1 A24 family peptidase Machinery gene
  SOI81_RS15785 (SOI81_15785) coaE 3351766..3352362 (+) 597 WP_062849621.1 dephospho-CoA kinase -
  SOI81_RS15790 (SOI81_15790) - 3352359..3353273 (-) 915 WP_016142379.1 DMT family transporter -
  SOI81_RS15795 (SOI81_15795) rlmB 3353309..3354058 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SOI81_RS15800 (SOI81_15800) - 3354161..3354487 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  SOI81_RS15805 (SOI81_15805) - 3354564..3355874 (-) 1311 WP_320540988.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45042.46 Da        Isoelectric Point: 9.8960

>NTDB_id=908773 SOI81_RS15775 WP_320540986.1 3349678..3350904(+) (pilC) [Acinetobacter pittii strain AbaK]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGTIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNIIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=908773 SOI81_RS15775 WP_320540986.1 3349678..3350904(+) (pilC) [Acinetobacter pittii strain AbaK]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAACATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCGACACTCGATATCACGATTTTCACCCGTCAACTTGCAACA
ATGATGAAAGCCGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCAGAAGGTCTAGAAAACCCAGCTATGCGCGAGGT
AGTACTCGGTATTAAAGGAGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCACTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATCAAAAAAGCTATGAAATATCCTGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGATCTGTTTTCTTCTTTTGGCGCAGATTTACCTGCATTCA
CCCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGGACAATTATTGCT
GCATTTCTCGAAGCTAAAAAGCGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTTACCCTGAAACTGCCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGCTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTCCCGCTCATTG
ATGCGCTTGAATCAACTGCTGGTGCTACTAACAATATTATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTCGCC
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCGATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTGGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTGGGCGGTTTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36