Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SOI76_RS16880 Genome accession   NZ_CP139249
Coordinates   3529189..3530415 (+) Length   408 a.a.
NCBI ID   WP_104080649.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524189..3535415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS16845 (SOI76_16845) rimP 3524859..3525383 (-) 525 WP_016142372.1 ribosome maturation factor RimP -
  SOI76_RS16865 (SOI76_16865) secG 3526021..3526350 (-) 330 WP_016142373.1 preprotein translocase subunit SecG -
  SOI76_RS16870 (SOI76_16870) tpiA 3526363..3527157 (-) 795 WP_104080647.1 triose-phosphate isomerase -
  SOI76_RS16875 (SOI76_16875) pilB 3527449..3529161 (+) 1713 WP_104080648.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SOI76_RS16880 (SOI76_16880) pilC 3529189..3530415 (+) 1227 WP_104080649.1 type II secretion system F family protein Machinery gene
  SOI76_RS16885 (SOI76_16885) pilD 3530415..3531275 (+) 861 WP_104080650.1 prepilin peptidase Machinery gene
  SOI76_RS16890 (SOI76_16890) coaE 3531277..3531873 (+) 597 WP_104080651.1 dephospho-CoA kinase -
  SOI76_RS16895 (SOI76_16895) - 3531870..3532784 (-) 915 WP_104080652.1 DMT family transporter -
  SOI76_RS16900 (SOI76_16900) rlmB 3532820..3533569 (-) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SOI76_RS16905 (SOI76_16905) - 3533672..3533998 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  SOI76_RS16910 (SOI76_16910) - 3534075..3535385 (-) 1311 WP_104080653.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45112.56 Da        Isoelectric Point: 9.8958

>NTDB_id=908308 SOI76_RS16880 WP_104080649.1 3529189..3530415(+) (pilC) [Acinetobacter pittii strain MCR8900]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDRLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=908308 SOI76_RS16880 WP_104080649.1 3529189..3530415(+) (pilC) [Acinetobacter pittii strain MCR8900]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCCACACTCGATATCACGATTTTCACCCGTCAACTTGCAACG
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTCTAGAAAACCCTGCTATGCGCGAGGT
AGTACTCGGCATTAAAGGCGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGGGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCCATGAAATATCCCGCAACGGTAATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATAGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365