Detailed information NTG0908309

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOI76_RS16885
• Genome accession: NZ_CP139249
• Coordinates: 3530415..3531275 (+)
• Length: 286 a.a.
• NCBI ID: WP_104080650.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain MCR8900
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3525415..3536275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI76_RS16865 (SOI76_16865)	secG	3526021..3526350 (-)	330	WP_016142373.1	preprotein translocase subunit SecG	-
SOI76_RS16870 (SOI76_16870)	tpiA	3526363..3527157 (-)	795	WP_104080647.1	triose-phosphate isomerase	-
SOI76_RS16875 (SOI76_16875)	pilB	3527449..3529161 (+)	1713	WP_104080648.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI76_RS16880 (SOI76_16880)	pilC	3529189..3530415 (+)	1227	WP_104080649.1	type II secretion system F family protein	Machinery gene
SOI76_RS16885 (SOI76_16885)	pilD	3530415..3531275 (+)	861	WP_104080650.1	prepilin peptidase	Machinery gene
SOI76_RS16890 (SOI76_16890)	coaE	3531277..3531873 (+)	597	WP_104080651.1	dephospho-CoA kinase	-
SOI76_RS16895 (SOI76_16895)	-	3531870..3532784 (-)	915	WP_104080652.1	DMT family transporter	-
SOI76_RS16900 (SOI76_16900)	rlmB	3532820..3533569 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI76_RS16905 (SOI76_16905)	-	3533672..3533998 (-)	327	WP_004795031.1	pyrimidine/purine nucleoside phosphorylase	-
SOI76_RS16910 (SOI76_16910)	-	3534075..3535385 (-)	1311	WP_104080653.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32269.72 Da
• Isoelectric Point: 7.1047

>NTDB_id=908309 SOI76_RS16885 WP_104080650.1 3530415..3531275(+) (pilD) [Acinetobacter pittii strain MCR8900]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCGRCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908309 SOI76_RS16885 WP_104080650.1 3530415..3531275(+) (pilD) [Acinetobacter pittii strain MCR8900]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGTACACCAAGAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTGCTTA
ATCCTGAGCAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGCCATCAACCT
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGTTGATGTTAAGAGGAAAATGCGGTCGTTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAACTACTCACCATGCTATGTTCATTAGTCGTCGTCATGGTTTTTGGCCCAACTCTACAAA
TGCTTTGGGGACTAGTGCTCACTTGGATCTTAATTGCTTTGACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT
TTTACCTTGCCTTTGGCTGCACTCGGCTTAGGCATTAATACCTTTAATATCTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGGTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GAGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTGCGCAATGATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	52.574	95.105	0.5
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.947	91.608	0.43