Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SJN48_RS18120 Genome accession   NZ_CP139212
Coordinates   3822600..3823826 (+) Length   408 a.a.
NCBI ID   WP_119684816.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3817600..3828826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS18085 (SJN48_18125) rimP 3818271..3818795 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  SJN48_RS18105 (SJN48_18145) secG 3819433..3819762 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  SJN48_RS18110 (SJN48_18150) tpiA 3819775..3820569 (-) 795 WP_005079338.1 triose-phosphate isomerase -
  SJN48_RS18115 (SJN48_18155) pilB 3820861..3822573 (+) 1713 WP_130120471.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SJN48_RS18120 (SJN48_18160) pilC 3822600..3823826 (+) 1227 WP_119684816.1 type II secretion system F family protein Machinery gene
  SJN48_RS18125 (SJN48_18165) pilD 3823826..3824686 (+) 861 WP_002114758.1 A24 family peptidase Machinery gene
  SJN48_RS18130 (SJN48_18170) coaE 3824688..3825284 (+) 597 WP_130120472.1 dephospho-CoA kinase -
  SJN48_RS18135 (SJN48_18175) - 3825281..3826195 (-) 915 WP_046812059.1 DMT family transporter -
  SJN48_RS18140 (SJN48_18180) rlmB 3826231..3826980 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SJN48_RS18145 (SJN48_18185) - 3827083..3827409 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  SJN48_RS18150 (SJN48_18190) - 3827486..3828796 (-) 1311 WP_130120473.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=908128 SJN48_RS18120 WP_119684816.1 3822600..3823826(+) (pilC) [Acinetobacter pittii strain WWTP]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=908128 SJN48_RS18120 WP_119684816.1 3822600..3823826(+) (pilC) [Acinetobacter pittii strain WWTP]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTTCGTAATATTCGGGAAAAGC
GTAAGAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCCACACTCGATATCACGATTTTCACCCGTCAACTTGCAACG
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTTTAGAAAACCCTGCTATGCGCGAGGT
AGTACTCGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCACTTGAAACCATGTTGGACCGCGTAGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATCAAAAAAGCTATGAAATATCCCGCAACGGTTATTGTGGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTATTTTCTTCTTTTGGTGCAGATTTACCTGCATTTA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGGTTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTGGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGAT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365