Detailed information NTG0908129

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SJN48_RS18125
• Genome accession: NZ_CP139212
• Coordinates: 3823826..3824686 (+)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain WWTP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3818826..3829686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SJN48_RS18105 (SJN48_18145)	secG	3819433..3819762 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SJN48_RS18110 (SJN48_18150)	tpiA	3819775..3820569 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
SJN48_RS18115 (SJN48_18155)	pilB	3820861..3822573 (+)	1713	WP_130120471.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SJN48_RS18120 (SJN48_18160)	pilC	3822600..3823826 (+)	1227	WP_119684816.1	type II secretion system F family protein	Machinery gene
SJN48_RS18125 (SJN48_18165)	pilD	3823826..3824686 (+)	861	WP_002114758.1	A24 family peptidase	Machinery gene
SJN48_RS18130 (SJN48_18170)	coaE	3824688..3825284 (+)	597	WP_130120472.1	dephospho-CoA kinase	-
SJN48_RS18135 (SJN48_18175)	-	3825281..3826195 (-)	915	WP_046812059.1	DMT family transporter	-
SJN48_RS18140 (SJN48_18180)	rlmB	3826231..3826980 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SJN48_RS18145 (SJN48_18185)	-	3827083..3827409 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SJN48_RS18150 (SJN48_18190)	-	3827486..3828796 (-)	1311	WP_130120473.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=908129 SJN48_RS18125 WP_002114758.1 3823826..3824686(+) (pilD) [Acinetobacter pittii strain WWTP]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908129 SJN48_RS18125 WP_002114758.1 3823826..3824686(+) (pilD) [Acinetobacter pittii strain WWTP]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTCTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437