Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SON02_RS05555 Genome accession   NZ_CP139211
Coordinates   1307290..1307685 (-) Length   131 a.a.
NCBI ID   WP_135027159.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1302290..1312685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS05540 (SON02_05525) - 1303272..1304321 (-) 1050 WP_135027153.1 LLM class flavin-dependent oxidoreductase -
  SON02_RS05545 (SON02_05530) groL 1304500..1306122 (-) 1623 WP_135027155.1 chaperonin GroEL -
  SON02_RS05550 (SON02_05535) groES 1306140..1306424 (-) 285 WP_135027157.1 co-chaperone GroES -
  SON02_RS05555 (SON02_05540) ssbB 1307290..1307685 (-) 396 WP_135027159.1 single-stranded DNA-binding protein Machinery gene
  SON02_RS05560 (SON02_05545) ytpR 1307765..1308391 (-) 627 WP_135027161.1 YtpR family tRNA-binding protein -
  SON02_RS05565 (SON02_05550) - 1308395..1308715 (-) 321 WP_135027163.1 thioredoxin family protein -
  SON02_RS05570 (SON02_05555) - 1308712..1308996 (-) 285 WP_135027165.1 DUF4651 domain-containing protein -
  SON02_RS05575 (SON02_05560) pepA 1309049..1310122 (+) 1074 WP_135027167.1 glutamyl aminopeptidase -
  SON02_RS05580 (SON02_05565) - 1310325..1310888 (-) 564 WP_135027169.1 folate family ECF transporter S component -
  SON02_RS05585 (SON02_05570) - 1311107..1311634 (-) 528 WP_135027213.1 ECF transporter S component -
  SON02_RS05590 (SON02_05575) - 1311634..1312491 (-) 858 WP_135027171.1 pyridoxamine kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14845.84 Da        Isoelectric Point: 5.2813

>NTDB_id=908052 SON02_RS05555 WP_135027159.1 1307290..1307685(-) (ssbB) [Streptococcus sp. LysM4]
MYNKVIMIGRLTAQPEMNQTVSGKHLTRITLAVNRRFKTGDGEREADFITAVFWDKLAEILASYGGKGSLISIDGELRTR
KYEKNGQNQYVTEVLGQSFQLLESRAQRAMRENNVSEGLADMVLDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=908052 SON02_RS05555 WP_135027159.1 1307290..1307685(-) (ssbB) [Streptococcus sp. LysM4]
ATGTATAATAAAGTGATTATGATTGGCCGTTTGACGGCCCAACCTGAAATGAATCAAACAGTGAGTGGAAAACATCTCAC
ACGTATAACGCTAGCAGTTAATCGGCGGTTTAAAACGGGAGATGGTGAGCGTGAAGCTGACTTCATTACAGCAGTCTTTT
GGGATAAATTAGCTGAGATTTTGGCATCTTACGGTGGAAAGGGGAGTCTTATTTCTATAGATGGTGAGCTTCGCACGCGT
AAATATGAAAAAAATGGTCAGAACCAGTATGTGACAGAAGTTCTGGGACAGTCCTTTCAATTACTTGAAAGTCGCGCCCA
ACGTGCTATGCGTGAAAATAACGTGAGCGAGGGTTTAGCTGATATGGTGTTAGATGAAGAAGAGCTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

68.702

100

0.687
  ssbB/cilA Streptococcus mitis SK321

67.939

100

0.679
  ssbB Lactococcus lactis subsp. cremoris KW2

58.772

87.023

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.378

90.84

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405