Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IDSSA_RS05775 | Genome accession | NZ_AP025249 |
| Coordinates | 1163912..1164340 (+) | Length | 142 a.a. |
| NCBI ID | WP_000934385.1 | Uniprot ID | A0A2K0CLZ8 |
| Organism | Staphylococcus aureus strain IDSA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1155866..1196466 | 1163912..1164340 | within | 0 |
Gene organization within MGE regions
Location: 1155866..1196466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IDSSA_RS05700 (IDSSA_0111060) | - | 1155866..1157251 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| IDSSA_RS05705 (IDSSA_0111070) | - | 1157442..1158155 (-) | 714 | WP_407878160.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IDSSA_RS05710 (IDSSA_0111080) | - | 1158363..1159217 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| IDSSA_RS05715 (IDSSA_0111090) | - | 1159229..1159945 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| IDSSA_RS05720 (IDSSA_0111100) | - | 1160109..1160351 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| IDSSA_RS05725 (IDSSA_0111110) | - | 1160364..1160810 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| IDSSA_RS05730 (IDSSA_0111120) | - | 1160825..1160965 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| IDSSA_RS05735 (IDSSA_0111130) | - | 1160958..1161167 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| IDSSA_RS05740 (IDSSA_0111140) | - | 1161224..1161964 (+) | 741 | WP_001148589.1 | phage antirepressor KilAC domain-containing protein | - |
| IDSSA_RS05745 (IDSSA_0111160) | - | 1162140..1162370 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| IDSSA_RS05750 (IDSSA_0111170) | - | 1162429..1162557 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| IDSSA_RS05755 (IDSSA_0111180) | - | 1162550..1162711 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| IDSSA_RS05760 (IDSSA_0111190) | - | 1162805..1163065 (+) | 261 | WP_000291068.1 | DUF1108 family protein | - |
| IDSSA_RS05765 (IDSSA_0111200) | - | 1163075..1163296 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| IDSSA_RS05770 (IDSSA_0111210) | - | 1163289..1163912 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| IDSSA_RS05775 (IDSSA_0111220) | ssbA | 1163912..1164340 (+) | 429 | WP_000934385.1 | single-stranded DNA-binding protein | Machinery gene |
| IDSSA_RS05780 (IDSSA_0111230) | - | 1164354..1165028 (+) | 675 | WP_001121810.1 | putative HNHc nuclease | - |
| IDSSA_RS05785 (IDSSA_0111240) | - | 1165021..1165776 (+) | 756 | WP_001037657.1 | DnaD domain protein | - |
| IDSSA_RS05790 (IDSSA_0111250) | - | 1165776..1166132 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| IDSSA_RS05795 (IDSSA_0111260) | - | 1166129..1167370 (+) | 1242 | WP_001106166.1 | DnaB helicase C-terminal domain-containing protein | - |
| IDSSA_RS05800 (IDSSA_0111270) | - | 1167367..1167582 (+) | 216 | WP_001024398.1 | hypothetical protein | - |
| IDSSA_RS05805 (IDSSA_0111280) | - | 1167585..1167806 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| IDSSA_RS05810 (IDSSA_0111290) | - | 1167816..1168241 (+) | 426 | WP_000451861.1 | phage N-6-adenine-methyltransferase | - |
| IDSSA_RS05815 (IDSSA_0111300) | - | 1168238..1168642 (+) | 405 | WP_017431722.1 | DUF1064 domain-containing protein | - |
| IDSSA_RS05820 (IDSSA_0111310) | - | 1168647..1168832 (+) | 186 | WP_016023518.1 | DUF3113 family protein | - |
| IDSSA_RS05825 (IDSSA_0111320) | - | 1168833..1169342 (+) | 510 | WP_016023519.1 | SA1788 family PVL leukocidin-associated protein | - |
| IDSSA_RS05830 (IDSSA_0111330) | - | 1169343..1169591 (+) | 249 | WP_015980409.1 | phi PVL orf 51-like protein | - |
| IDSSA_RS05835 (IDSSA_0111340) | - | 1169604..1170005 (+) | 402 | WP_016023521.1 | hypothetical protein | - |
| IDSSA_RS05840 (IDSSA_0111350) | - | 1170002..1170349 (+) | 348 | WP_017431995.1 | YopX family protein | - |
| IDSSA_RS05845 (IDSSA_0111360) | - | 1170346..1170654 (+) | 309 | WP_000144706.1 | hypothetical protein | - |
| IDSSA_RS05850 (IDSSA_0111370) | - | 1170647..1170895 (+) | 249 | WP_016023522.1 | DUF1024 family protein | - |
| IDSSA_RS05855 (IDSSA_0111380) | - | 1170888..1171418 (+) | 531 | WP_000185653.1 | dUTP diphosphatase | - |
| IDSSA_RS05860 (IDSSA_0111390) | - | 1171455..1171691 (+) | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| IDSSA_RS05865 (IDSSA_0111400) | - | 1171716..1171952 (+) | 237 | WP_000483477.1 | hypothetical protein | - |
| IDSSA_RS05870 (IDSSA_0111410) | - | 1171945..1172331 (+) | 387 | WP_000592213.1 | hypothetical protein | - |
| IDSSA_RS05875 (IDSSA_0111420) | rinB | 1172328..1172501 (+) | 174 | WP_016023523.1 | transcriptional activator RinB | - |
| IDSSA_RS05880 (IDSSA_0111430) | - | 1172502..1172867 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| IDSSA_RS05885 (IDSSA_0111440) | - | 1172868..1173014 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| IDSSA_RS05890 (IDSSA_0111450) | - | 1173121..1173531 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| IDSSA_RS05895 (IDSSA_0111460) | - | 1173579..1173995 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IDSSA_RS05900 (IDSSA_0111470) | - | 1174227..1174526 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
| IDSSA_RS05905 (IDSSA_0111480) | - | 1174657..1175001 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| IDSSA_RS05910 (IDSSA_0111490) | - | 1174998..1176659 (+) | 1662 | WP_000625087.1 | terminase large subunit | - |
| IDSSA_RS05915 (IDSSA_0111500) | - | 1176675..1177838 (+) | 1164 | WP_000025268.1 | phage portal protein | - |
| IDSSA_RS05920 (IDSSA_0111510) | - | 1177822..1178559 (+) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| IDSSA_RS05925 (IDSSA_0111520) | - | 1178583..1179728 (+) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| IDSSA_RS05930 (IDSSA_0111530) | - | 1179748..1180032 (+) | 285 | WP_000238236.1 | hypothetical protein | - |
| IDSSA_RS05935 (IDSSA_0111540) | - | 1180022..1180306 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| IDSSA_RS05940 (IDSSA_0111550) | - | 1180290..1180652 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| IDSSA_RS05945 (IDSSA_0111560) | - | 1180649..1181053 (+) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| IDSSA_RS05950 (IDSSA_0111570) | - | 1181050..1181457 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| IDSSA_RS05955 (IDSSA_0111580) | - | 1181458..1182102 (+) | 645 | WP_000268741.1 | major tail protein | - |
| IDSSA_RS05960 (IDSSA_0111590) | - | 1182156..1182368 (+) | 213 | WP_230402383.1 | Ig-like domain-containing protein | - |
| IDSSA_RS05965 (IDSSA_0111600) | gpG | 1182418..1182768 (+) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| IDSSA_RS05970 (IDSSA_0111610) | gpGT | 1182819..1182956 (+) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| IDSSA_RS05975 (IDSSA_0111620) | - | 1183013..1187542 (+) | 4530 | WP_407876421.1 | phage tail tape measure protein | - |
| IDSSA_RS05980 (IDSSA_0111630) | - | 1187539..1189023 (+) | 1485 | WP_000567407.1 | phage distal tail protein | - |
| IDSSA_RS05985 (IDSSA_0111640) | - | 1189039..1192824 (+) | 3786 | WP_407878145.1 | phage tail spike protein | - |
| IDSSA_RS05990 (IDSSA_0111650) | - | 1192814..1192966 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| IDSSA_RS05995 (IDSSA_0111660) | - | 1193013..1193300 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| IDSSA_RS06000 (IDSSA_0111670) | - | 1193358..1193654 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| IDSSA_RS06005 (IDSSA_0111680) | pepG1 | 1193846..1193980 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| IDSSA_RS06010 | - | 1194033..1194140 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| IDSSA_RS06015 (IDSSA_0111690) | - | 1194192..1194446 (+) | 255 | WP_000611512.1 | phage holin | - |
| IDSSA_RS06020 (IDSSA_0111700) | - | 1194458..1195213 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| IDSSA_RS06025 (IDSSA_0111710) | - | 1195679..1195855 (+) | 177 | WP_000201922.1 | hypothetical protein | - |
| IDSSA_RS06030 (IDSSA_0111720) | - | 1195852..1196466 (+) | 615 | WP_017431604.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15872.58 Da Isoelectric Point: 8.4825
>NTDB_id=90684 IDSSA_RS05775 WP_000934385.1 1163912..1164340(+) (ssbA) [Staphylococcus aureus strain IDSA1]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=90684 IDSSA_RS05775 WP_000934385.1 1163912..1164340(+) (ssbA) [Staphylococcus aureus strain IDSA1]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.14 |
100 |
0.704 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.958 |
100 |
0.423 |
| ssbA | Streptococcus mutans UA159 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.437 |
100 |
0.394 |