Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABL390_RS18990 Genome accession   NZ_CP157581
Coordinates   4128739..4129827 (-) Length   362 a.a.
NCBI ID   WP_003122289.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NPA09B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4123739..4134827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL390_RS18965 (ABL390_18965) - 4124067..4125053 (-) 987 WP_003111200.1 phospholipase C -
  ABL390_RS18970 (ABL390_18970) aroE 4125164..4125988 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  ABL390_RS18975 (ABL390_18975) hemF 4126046..4126963 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  ABL390_RS18980 (ABL390_18980) - 4127154..4128131 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  ABL390_RS18985 (ABL390_18985) - 4128141..4128698 (-) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  ABL390_RS18990 (ABL390_18990) dprA 4128739..4129827 (-) 1089 WP_003122289.1 DNA-processing protein DprA Machinery gene
  ABL390_RS18995 (ABL390_18995) tsaP 4129962..4130987 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABL390_RS19000 (ABL390_19000) def 4131126..4131632 (+) 507 WP_003107059.1 peptide deformylase -
  ABL390_RS19005 (ABL390_19005) fmt 4131687..4132631 (+) 945 WP_003122290.1 methionyl-tRNA formyltransferase -
  ABL390_RS19010 (ABL390_19010) rsmB 4132628..4133932 (+) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37664.16 Da        Isoelectric Point: 7.0288

>NTDB_id=906151 ABL390_RS18990 WP_003122289.1 4128739..4129827(-) (dprA) [Pseudomonas aeruginosa strain NPA09B]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGAARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=906151 ABL390_RS18990 WP_003122289.1 4128739..4129827(-) (dprA) [Pseudomonas aeruginosa strain NPA09B]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCG
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

38.567

100

0.387
  dprA Acinetobacter baumannii strain A118

38.92

97.238

0.378
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37