NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	SE859_RS01180	Genome accession	NZ_CP138367
Coordinates	199197..199592 (+)	Length	131 a.a.
NCBI ID	WP_000282450.1	Uniprot ID	A0AAW6XW90
Organism	Streptococcus agalactiae strain R31-snf2-MTase2
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 194197..204592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE859_RS01145 (SE859_01145)	proC	194591..195361 (-)	771	WP_001867096.1	pyrroline-5-carboxylate reductase	-
SE859_RS01150 (SE859_01150)	pepA	195431..196498 (-)	1068	WP_001281321.1	glutamyl aminopeptidase	-
SE859_RS01155 (SE859_01155)	-	196683..196922 (-)	240	WP_000660181.1	hypothetical protein	-
SE859_RS01160 (SE859_01160)	-	197083..197367 (+)	285	WP_000791272.1	DUF4651 domain-containing protein	-
SE859_RS01165 (SE859_01165)	-	197364..197687 (+)	324	WP_000601792.1	thioredoxin family protein	-
SE859_RS01170 (SE859_01170)	ytpR	197720..198346 (+)	627	WP_000578331.1	YtpR family tRNA-binding protein	-
SE859_RS01175 (SE859_01175)	-	198400..199116 (-)	717	WP_000186183.1	class I SAM-dependent methyltransferase	-
SE859_RS01180 (SE859_01180)	ssbA	199197..199592 (+)	396	WP_000282450.1	single-stranded DNA-binding protein	Machinery gene
SE859_RS01185 (SE859_01185)	-	199715..200359 (+)	645	WP_000416612.1	HAD family phosphatase	-
SE859_RS01190 (SE859_01190)	-	200386..202131 (+)	1746	WP_047198532.1	LytS/YhcK type 5TM receptor domain-containing protein	-
SE859_RS01195 (SE859_01195)	-	202112..202852 (+)	741	WP_000697630.1	LytTR family DNA-binding domain-containing protein	-
SE859_RS01200 (SE859_01200)	-	203022..203477 (+)	456	WP_000683316.1	CidA/LrgA family protein	-
SE859_RS01205 (SE859_01205)	lrgB	203479..204207 (+)	729	WP_000421727.1	antiholin-like protein LrgB	-

Sequence

Protein

Download Length: 131 a.a. Molecular weight: 14790.80 Da Isoelectric Point: 7.0189

                                >NTDB_id=902237 SE859_RS01180 WP_000282450.1 199197..199592(+) (ssbA) [Streptococcus agalactiae strain R31-snf2-MTase2]

MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTR

KYEKDGQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF

Nucleotide

Download Length: 396 bp

                                >NTDB_id=902237 SE859_RS01180 WP_000282450.1 199197..199592(+) (ssbA) [Streptococcus agalactiae strain R31-snf2-MTase2]

ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC

GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT

GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAGTAGATGGTGAATTGCGTACGCGC

AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTTCCCA

ACGTGCTATGCGTGAAAATAACATTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	80.153	100	0.802
ssbB/cilA	Streptococcus pneumoniae R6	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae Rx1	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae D39	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae TIGR4	77.099	100	0.771
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.763
ssbB/cilA	Streptococcus mitis NCTC 12261	76.336	100	0.763
ssbB/cilA	Streptococcus mitis SK321	76.336	100	0.763
ssbB	Lactococcus lactis subsp. cremoris KW2	59.649	87.023	0.519
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.402	81.679	0.42
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405

Detailed information NTG0902237