Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LDO36_RS17370 Genome accession   NZ_AP025155
Coordinates   3856188..3857906 (-) Length   572 a.a.
NCBI ID   WP_399481255.1    Uniprot ID   -
Organism   Vibrio penaeicida strain TUMSAT-OK2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3851188..3862906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO36_RS17350 - 3851922..3852755 (-) 834 WP_126606769.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LDO36_RS17355 - 3852825..3854339 (-) 1515 WP_126606770.1 AAA family ATPase -
  LDO36_RS17360 aroB 3854370..3855458 (-) 1089 WP_104400116.1 3-dehydroquinate synthase -
  LDO36_RS17365 aroK 3855481..3855999 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO36_RS17370 pilQ 3856188..3857906 (-) 1719 WP_399481255.1 type IV pilus secretin PilQ Machinery gene
  LDO36_RS17375 pilP 3857952..3858464 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO36_RS17380 pilO 3858457..3859044 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO36_RS17385 pilN 3859041..3859601 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO36_RS17390 pilM 3859594..3860610 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 61795.86 Da        Isoelectric Point: 4.2968

>NTDB_id=90142 LDO36_RS17370 WP_399481255.1 3856188..3857906(-) (pilQ) [Vibrio penaeicida strain TUMSAT-OK2]
MYRRALLIFIGLFVATGASAQSNEFVGIDFRLNKDKHALLVIELASNAAAVDIQPMPDGLNISLHETSVEDEKLFVVDVA
DFSTNVESVEVFREGSNTRLFATTNAAYNYDYRLRDRFLEVTVSAKPKDEPEQASILEKDGKLISINFQDIPVRSVLQLI
ADYNEFNLVVSDSVSGNLTLKVDDVPWQQVLDIILKVKGLDKRVEGNVILVAPKEEFDSREQQDLEQERLAQELGSLESK
IIEVKFAKASDIADMIGGHGEVSMLSERGSISIDERTNALLVRDLPENIAVVEDIVESLDIPVKQVQIEARIVTITEGEI
EELGVRWGFSSTSGTNTVGGSIENNLATVGLYQAGGGSGGDSGGEGEGGGGSSTIDDFLAVNLGATNKNAASIAFQVAKL
GTDTLLDLELSALQTENKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSSGATTVSFRKAVLSLKVTPQITPDNKLVLD
LSVTQDRPGKVVKTGNGEALAIETQRIGTQVLVDNGETVVLGGIYQQSVTNTVDKVPLLGDLPLLGALFRRSYENLGKSE
LLIFITPKVVLQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=90142 LDO36_RS17370 WP_399481255.1 3856188..3857906(-) (pilQ) [Vibrio penaeicida strain TUMSAT-OK2]
ATGTATCGTCGTGCTTTGCTTATCTTTATAGGGTTATTTGTTGCGACTGGAGCATCTGCTCAATCCAATGAATTTGTAGG
AATTGATTTTAGACTCAATAAAGACAAGCATGCACTGTTGGTGATTGAATTGGCGTCTAACGCAGCGGCTGTGGATATTC
AGCCAATGCCCGATGGCTTGAACATCTCCTTGCATGAAACCAGCGTAGAAGATGAAAAGCTATTTGTTGTAGATGTAGCC
GACTTTTCTACTAATGTCGAAAGTGTCGAGGTGTTTAGAGAAGGTTCAAATACCCGCCTATTTGCCACGACAAACGCCGC
CTACAATTATGATTATCGATTACGTGATCGCTTTCTTGAGGTCACGGTTTCCGCCAAACCAAAAGATGAGCCTGAACAAG
CCAGTATTCTTGAAAAAGACGGCAAGCTTATTTCGATCAACTTTCAAGACATCCCAGTTCGAAGCGTATTGCAGCTCATA
GCGGACTACAACGAGTTCAACCTTGTTGTCTCAGATTCAGTATCCGGCAATCTCACATTAAAGGTCGATGATGTCCCTTG
GCAGCAAGTCCTCGACATCATTTTGAAAGTGAAGGGGTTGGACAAGCGCGTTGAAGGTAACGTGATTTTGGTCGCCCCTA
AAGAAGAGTTTGATAGCCGAGAGCAACAAGATCTCGAACAGGAGCGTTTGGCACAAGAACTGGGCTCGTTGGAATCAAAA
ATTATTGAAGTAAAGTTCGCCAAGGCGTCTGATATTGCCGATATGATTGGCGGGCACGGTGAAGTATCGATGCTTTCTGA
GCGCGGAAGTATTTCGATAGATGAACGTACAAATGCTTTGTTAGTACGTGATTTGCCTGAAAACATCGCCGTTGTTGAAG
ACATTGTCGAGTCGTTAGATATTCCTGTTAAACAAGTTCAAATTGAAGCGCGTATTGTCACCATAACAGAAGGGGAAATT
GAGGAGCTAGGGGTTCGTTGGGGCTTCAGCTCGACCAGTGGAACCAATACTGTTGGCGGGAGCATAGAAAACAATCTTGC
AACCGTTGGGCTTTACCAAGCAGGCGGTGGCTCTGGTGGCGATTCCGGTGGAGAAGGTGAGGGCGGAGGCGGCAGTTCAA
CCATTGATGATTTCCTTGCGGTGAATTTAGGCGCAACAAATAAAAATGCGGCAAGTATTGCGTTTCAAGTGGCAAAACTT
GGGACAGATACCTTGTTGGATCTGGAGCTCTCTGCGCTCCAAACAGAAAACAAAGCGGAAATCATTTCCAGCCCAAGACT
GATTACGACCAATAAAAAACCGGCTTATATTGAGCAGGGTACCGAAATTCCATATCTTGAAGCTTCTTCTAGTGGTGCGA
CGACAGTGTCATTCCGAAAAGCGGTATTGAGCTTGAAAGTAACGCCTCAGATTACGCCAGACAACAAATTAGTGCTGGAT
CTGAGTGTAACGCAGGATAGACCCGGTAAAGTCGTAAAAACAGGGAACGGCGAAGCCCTTGCTATTGAAACTCAGAGAAT
TGGTACTCAAGTTTTAGTAGATAACGGTGAAACAGTTGTTCTGGGAGGAATCTATCAGCAAAGTGTGACAAATACCGTCG
ATAAGGTGCCACTTTTGGGTGATTTACCCCTATTAGGCGCACTTTTCCGTCGAAGTTACGAAAATTTAGGGAAAAGCGAA
TTGCTGATTTTCATTACGCCGAAAGTGGTTCTACAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(240-305)

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Secretin and TonB N terminus short domain (STN)

(166-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

72.193

98.077

0.708
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

67.596

100

0.678
  pilQ Vibrio cholerae strain A1552

67.596

100

0.678
  comQ Acinetobacter baylyi ADP1

38.136

100

0.393
  pilQ Legionella pneumophila strain ERS1305867

39.469

98.776

0.39
  pilQ Legionella pneumophila strain Lp02

39.469

98.776

0.39
  pilQ Pseudomonas aeruginosa PAK

40

97.028

0.388
  pilQ Acinetobacter baumannii strain A118

36.21

100

0.374
  pilQ Acinetobacter baumannii D1279779

36.21

100

0.374

Multiple sequence alignment