Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LDO36_RS17390 Genome accession   NZ_AP025155
Coordinates   3859594..3860610 (-) Length   338 a.a.
NCBI ID   WP_126606772.1    Uniprot ID   A0AAV5NV36
Organism   Vibrio penaeicida strain TUMSAT-OK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3854594..3865610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO36_RS17365 aroK 3855481..3855999 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO36_RS17370 pilQ 3856188..3857906 (-) 1719 WP_399481255.1 type IV pilus secretin PilQ Machinery gene
  LDO36_RS17375 pilP 3857952..3858464 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO36_RS17380 pilO 3858457..3859044 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO36_RS17385 pilN 3859041..3859601 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO36_RS17390 pilM 3859594..3860610 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDO36_RS17395 - 3860755..3863250 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -
  LDO36_RS17400 oxyR 3863342..3864223 (-) 882 WP_101114073.1 DNA-binding transcriptional regulator OxyR -
  LDO36_RS17405 - 3864403..3865134 (+) 732 WP_126606774.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37195.52 Da        Isoelectric Point: 6.8371

>NTDB_id=90146 LDO36_RS17390 WP_126606772.1 3859594..3860610(-) (pilM) [Vibrio penaeicida strain TUMSAT-OK2]
MGRSLVIGIDFGHHSIKAVAMKPIGELMQLVGYNELNVPEDIFSENHTLDYQKIVKKLKELKKGLPLFSHQVAVSVPDKA
VISKVLQIEQDMDGREQEFAVHQAFGQQSPIPLEELSLDFIEVDQKVTTRSSTSTFQVYATRKEVVDSRVTALTKAGFKP
LTIDVHANSLLKVWRLASQVHPDRRQWMLVDIGLNQTSLCTVAAGRTPFYKEIPFGTQNVAQSQAMSDAMTLSSDSVTQS
FVKDLGEKLQRHISLYNSVNPQQNIDGIWLSGGGANLVGIADMLSKELRLETSPLNPFGLVENGTKQSVKQLSDSAAYGV
AMGLAISGVEWLKGNHHA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=90146 LDO36_RS17390 WP_126606772.1 3859594..3860610(-) (pilM) [Vibrio penaeicida strain TUMSAT-OK2]
ATGGGTAGATCTTTAGTAATTGGCATCGATTTCGGTCATCACAGTATTAAAGCTGTCGCAATGAAGCCTATCGGCGAGCT
AATGCAATTGGTTGGTTATAATGAGCTTAATGTACCCGAAGATATTTTCTCTGAAAACCATACCCTCGATTATCAGAAGA
TTGTAAAGAAACTCAAAGAACTTAAAAAGGGCTTACCTCTTTTTAGTCATCAAGTCGCAGTTTCCGTACCCGATAAGGCT
GTTATCAGCAAAGTACTTCAAATTGAACAAGATATGGATGGGAGAGAGCAGGAGTTCGCTGTCCATCAAGCGTTTGGTCA
ACAATCACCGATCCCACTCGAAGAATTAAGCCTCGATTTTATTGAAGTGGACCAAAAAGTCACGACTCGCAGTTCGACTT
CCACTTTTCAAGTTTATGCGACACGCAAAGAGGTGGTCGACTCTCGTGTTACCGCATTAACGAAAGCCGGTTTTAAGCCT
CTGACGATTGATGTCCATGCCAATAGCTTGTTGAAAGTATGGCGTTTGGCTAGCCAAGTTCATCCTGATAGAAGGCAGTG
GATGCTGGTGGATATCGGTTTAAATCAAACATCTTTGTGTACTGTCGCAGCAGGCAGAACCCCTTTCTATAAAGAAATCC
CATTTGGTACTCAAAACGTTGCGCAGTCACAAGCAATGTCTGATGCCATGACTCTGAGTAGCGACTCCGTCACCCAGAGT
TTTGTCAAAGATCTGGGTGAAAAGCTACAAAGACACATCAGCTTATACAACTCCGTAAACCCCCAACAAAACATTGATGG
CATTTGGTTGAGCGGCGGCGGGGCTAATTTGGTGGGTATTGCTGACATGCTTAGTAAAGAACTTCGGCTCGAAACCTCGC
CACTAAATCCGTTTGGGTTAGTTGAAAATGGCACTAAGCAGTCGGTTAAGCAATTGTCGGATTCTGCCGCTTATGGCGTG
GCAATGGGGTTGGCGATTAGCGGTGTTGAGTGGTTAAAAGGAAATCACCATGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.118

100

0.544
  pilM Vibrio campbellii strain DS40M4

44.048

99.408

0.438

Multiple sequence alignment