Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LDO36_RS17375 Genome accession   NZ_AP025155
Coordinates   3857952..3858464 (-) Length   170 a.a.
NCBI ID   WP_101114082.1    Uniprot ID   A0AAV5NW88
Organism   Vibrio penaeicida strain TUMSAT-OK2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3852952..3863464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO36_RS17360 aroB 3854370..3855458 (-) 1089 WP_104400116.1 3-dehydroquinate synthase -
  LDO36_RS17365 aroK 3855481..3855999 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO36_RS17370 pilQ 3856188..3857906 (-) 1719 WP_399481255.1 type IV pilus secretin PilQ Machinery gene
  LDO36_RS17375 pilP 3857952..3858464 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO36_RS17380 pilO 3858457..3859044 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO36_RS17385 pilN 3859041..3859601 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO36_RS17390 pilM 3859594..3860610 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDO36_RS17395 - 3860755..3863250 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18570.84 Da        Isoelectric Point: 10.7318

>NTDB_id=90143 LDO36_RS17375 WP_101114082.1 3857952..3858464(-) (pilP) [Vibrio penaeicida strain TUMSAT-OK2]
MNKPLMALVAIAALSGCRANHEPLQDFILKTQANASTQVSKLQAEQSFKASEYVPVTARVPFALPKIAVVETQPSLVKDC
WQPASRRKNGKLERFALTQLKLKGVMGSGKKVSGIIQVPDGHVVKVKQGHYLGLNNGKVINITPKHLTIQETLPDGLGCW
QQRNVKLALK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=90143 LDO36_RS17375 WP_101114082.1 3857952..3858464(-) (pilP) [Vibrio penaeicida strain TUMSAT-OK2]
ATGAATAAGCCGCTGATGGCACTGGTCGCAATTGCAGCTTTAAGCGGTTGTCGTGCCAACCACGAACCGCTTCAGGACTT
TATTTTAAAGACACAAGCCAACGCGTCTACGCAAGTATCCAAGCTTCAAGCAGAGCAGTCGTTTAAGGCCAGTGAATATG
TGCCAGTAACGGCACGTGTTCCTTTTGCTTTACCCAAAATTGCGGTTGTTGAAACCCAACCATCTTTGGTTAAAGACTGT
TGGCAACCAGCCTCCCGAAGGAAGAATGGGAAATTAGAAAGGTTTGCTCTCACTCAACTCAAGTTAAAAGGGGTCATGGG
AAGCGGCAAAAAGGTGTCGGGCATTATTCAAGTCCCTGATGGTCATGTCGTCAAGGTAAAGCAGGGACATTACCTTGGTT
TAAACAATGGCAAGGTAATCAACATTACTCCAAAGCACCTGACGATTCAGGAAACACTACCTGATGGGCTTGGGTGTTGG
CAGCAGCGTAACGTGAAGCTCGCATTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)

Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1)

(1-17)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

53.846

99.412

0.535
  pilP Vibrio cholerae strain A1552

51.765

100

0.518

Multiple sequence alignment