Detailed information NTG0090098

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LDP65_RS17390
• Genome accession: NZ_AP025152
• Coordinates: 3856609..3858327 (-)
• Length: 572 a.a.
• NCBI ID: WP_399481255.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain TUMSAT-OK1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3851609..3863327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDP65_RS17370	-	3852343..3853176 (-)	834	WP_126606769.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
LDP65_RS17375	-	3853246..3854760 (-)	1515	WP_126606770.1	AAA family ATPase	-
LDP65_RS17380	aroB	3854791..3855879 (-)	1089	WP_104400116.1	3-dehydroquinate synthase	-
LDP65_RS17385	aroK	3855902..3856420 (-)	519	WP_101114086.1	shikimate kinase AroK	-
LDP65_RS17390	pilQ	3856609..3858327 (-)	1719	WP_399481255.1	type IV pilus secretin PilQ	Machinery gene
LDP65_RS17395	pilP	3858373..3858885 (-)	513	WP_101114082.1	pilus assembly protein PilP	Machinery gene
LDP65_RS17400	pilO	3858878..3859465 (-)	588	WP_101114080.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDP65_RS17405	pilN	3859462..3860022 (-)	561	WP_126606771.1	PilN domain-containing protein	Machinery gene
LDP65_RS17410	pilM	3860015..3861031 (-)	1017	WP_126606772.1	type IV pilus assembly protein PilM	Machinery gene

Sequence

Protein

• Length: 572 a.a.
• Molecular weight: 61795.86 Da
• Isoelectric Point: 4.2968

>NTDB_id=90098 LDP65_RS17390 WP_399481255.1 3856609..3858327(-) (pilQ) [Vibrio penaeicida strain TUMSAT-OK1]
MYRRALLIFIGLFVATGASAQSNEFVGIDFRLNKDKHALLVIELASNAAAVDIQPMPDGLNISLHETSVEDEKLFVVDVA
DFSTNVESVEVFREGSNTRLFATTNAAYNYDYRLRDRFLEVTVSAKPKDEPEQASILEKDGKLISINFQDIPVRSVLQLI
ADYNEFNLVVSDSVSGNLTLKVDDVPWQQVLDIILKVKGLDKRVEGNVILVAPKEEFDSREQQDLEQERLAQELGSLESK
IIEVKFAKASDIADMIGGHGEVSMLSERGSISIDERTNALLVRDLPENIAVVEDIVESLDIPVKQVQIEARIVTITEGEI
EELGVRWGFSSTSGTNTVGGSIENNLATVGLYQAGGGSGGDSGGEGEGGGGSSTIDDFLAVNLGATNKNAASIAFQVAKL
GTDTLLDLELSALQTENKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSSGATTVSFRKAVLSLKVTPQITPDNKLVLD
LSVTQDRPGKVVKTGNGEALAIETQRIGTQVLVDNGETVVLGGIYQQSVTNTVDKVPLLGDLPLLGALFRRSYENLGKSE
LLIFITPKVVLQ

Nucleotide

• Length: 1719 bp

>NTDB_id=90098 LDP65_RS17390 WP_399481255.1 3856609..3858327(-) (pilQ) [Vibrio penaeicida strain TUMSAT-OK1]
ATGTATCGTCGTGCTTTGCTTATCTTTATAGGGTTATTTGTTGCGACTGGAGCATCTGCTCAATCCAATGAATTTGTAGG
AATTGATTTTAGACTCAATAAAGACAAGCATGCACTGTTGGTGATTGAATTGGCGTCTAACGCAGCGGCTGTGGATATTC
AGCCAATGCCCGATGGCTTGAACATCTCCTTGCATGAAACCAGCGTAGAAGATGAAAAGCTATTTGTTGTAGATGTAGCC
GACTTTTCTACTAATGTCGAAAGTGTCGAGGTGTTTAGAGAAGGTTCAAATACCCGCCTATTTGCCACGACAAACGCCGC
CTACAATTATGATTATCGATTACGTGATCGCTTTCTTGAGGTCACGGTTTCCGCCAAACCAAAAGATGAGCCTGAACAAG
CCAGTATTCTTGAAAAAGACGGCAAGCTTATTTCGATCAACTTTCAAGACATCCCAGTTCGAAGCGTATTGCAGCTCATA
GCGGACTACAACGAGTTCAACCTTGTTGTCTCAGATTCAGTATCCGGCAATCTCACATTAAAGGTCGATGATGTCCCTTG
GCAGCAAGTCCTCGACATCATTTTGAAAGTGAAGGGGTTGGACAAGCGCGTTGAAGGTAACGTGATTTTGGTCGCCCCTA
AAGAAGAGTTTGATAGCCGAGAGCAACAAGATCTCGAACAGGAGCGTTTGGCACAAGAACTGGGCTCGTTGGAATCAAAA
ATTATTGAAGTAAAGTTCGCCAAGGCGTCTGATATTGCCGATATGATTGGCGGGCACGGTGAAGTATCGATGCTTTCTGA
GCGCGGAAGTATTTCGATAGATGAACGTACAAATGCTTTGTTAGTACGTGATTTGCCTGAAAACATCGCCGTTGTTGAAG
ACATTGTCGAGTCGTTAGATATTCCTGTTAAACAAGTTCAAATTGAAGCGCGTATTGTCACCATAACAGAAGGGGAAATT
GAGGAGCTAGGGGTTCGTTGGGGCTTCAGCTCGACCAGTGGAACCAATACTGTTGGCGGGAGCATAGAAAACAATCTTGC
AACCGTTGGGCTTTACCAAGCAGGCGGTGGCTCTGGTGGCGATTCCGGTGGAGAAGGTGAGGGCGGAGGCGGCAGTTCAA
CCATTGATGATTTCCTTGCGGTGAATTTAGGCGCAACAAATAAAAATGCGGCAAGTATTGCGTTTCAAGTGGCAAAACTT
GGGACAGATACCTTGTTGGATCTGGAGCTCTCTGCGCTCCAAACAGAAAACAAAGCGGAAATCATTTCCAGCCCAAGACT
GATTACGACCAATAAAAAACCGGCTTATATTGAGCAGGGTACCGAAATTCCATATCTTGAAGCTTCTTCTAGTGGTGCGA
CGACAGTGTCATTCCGAAAAGCGGTATTGAGCTTGAAAGTAACGCCTCAGATTACGCCAGACAACAAATTAGTGCTGGAT
CTGAGTGTAACGCAGGATAGACCCGGTAAAGTCGTAAAAACAGGGAACGGCGAAGCCCTTGCTATTGAAACTCAGAGAAT
TGGTACTCAAGTTTTAGTAGATAACGGTGAAACAGTTGTTCTGGGAGGAATCTATCAGCAAAGTGTGACAAATACCGTCG
ATAAGGTGCCACTTTTGGGTGATTTACCCCTATTAGGCGCACTTTTCCGTCGAAGTTACGAAAATTTAGGGAAAAGCGAA
TTGCTGATTTTCATTACGCCGAAAGTGGTTCTACAGTAG

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (240-305)

• Bacterial type II and III secretion system protein (Secretin) (412-570)

• Secretin and TonB N terminus short domain (STN) (166-214)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	72.193	98.077	0.708
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	67.596	100	0.678
pilQ	Vibrio cholerae strain A1552	67.596	100	0.678
comQ	Acinetobacter baylyi ADP1	38.136	100	0.393
pilQ	Legionella pneumophila strain ERS1305867	39.469	98.776	0.39
pilQ	Legionella pneumophila strain Lp02	39.469	98.776	0.39
pilQ	Pseudomonas aeruginosa PAK	40	97.028	0.388
pilQ	Acinetobacter baumannii strain A118	36.21	100	0.374
pilQ	Acinetobacter baumannii D1279779	36.21	100	0.374