Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LDP65_RS17405 Genome accession   NZ_AP025152
Coordinates   3859462..3860022 (-) Length   186 a.a.
NCBI ID   WP_126606771.1    Uniprot ID   A0AAV5NV78
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3854462..3865022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS17380 aroB 3854791..3855879 (-) 1089 WP_104400116.1 3-dehydroquinate synthase -
  LDP65_RS17385 aroK 3855902..3856420 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDP65_RS17390 pilQ 3856609..3858327 (-) 1719 WP_399481255.1 type IV pilus secretin PilQ Machinery gene
  LDP65_RS17395 pilP 3858373..3858885 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDP65_RS17400 pilO 3858878..3859465 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDP65_RS17405 pilN 3859462..3860022 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDP65_RS17410 pilM 3860015..3861031 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDP65_RS17415 - 3861176..3863671 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -
  LDP65_RS17420 oxyR 3863763..3864644 (-) 882 WP_101114073.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 21313.47 Da        Isoelectric Point: 9.3326

>NTDB_id=90101 LDP65_RS17405 WP_126606771.1 3859462..3860022(-) (pilN) [Vibrio penaeicida strain TUMSAT-OK1]
MHSINLLPWRDEQRAKYRRQFFSYLAAAILVAVGVQWGAGVYFSQQKSMQEERNAELTRHISYLDQQLRGLSQVRDQHES
ILTRLRSVEALQIKRNKTTDFMSLLPDAIPPGVFVDKIEMNDFEVEINGISDSTANITTMLDLLERSAKLADVEMHSIVS
GKKLFGKVFKTFKVSFVFAPQKDEKS

Nucleotide


Download         Length: 561 bp        

>NTDB_id=90101 LDP65_RS17405 WP_126606771.1 3859462..3860022(-) (pilN) [Vibrio penaeicida strain TUMSAT-OK1]
ATGCATAGCATCAACTTATTGCCTTGGCGCGACGAGCAGCGTGCTAAATACCGTCGTCAGTTTTTTTCTTATCTCGCTGC
TGCGATTTTGGTTGCCGTTGGTGTGCAGTGGGGCGCTGGTGTGTATTTTTCCCAGCAGAAAAGTATGCAAGAAGAGCGCA
ATGCCGAACTGACTCGACACATCTCTTATCTTGACCAGCAACTACGTGGGCTAAGCCAAGTTCGCGATCAGCATGAATCT
ATCCTAACTCGGTTGCGTTCGGTCGAAGCGCTGCAAATAAAACGCAATAAAACAACCGATTTTATGTCTCTGTTGCCTGA
TGCTATTCCACCTGGCGTCTTCGTCGACAAAATTGAGATGAACGACTTTGAAGTAGAAATTAACGGCATCAGCGACAGTA
CAGCCAATATCACGACCATGCTCGATCTATTGGAGCGTTCAGCCAAACTCGCTGACGTGGAAATGCACTCAATTGTGTCG
GGGAAGAAGTTGTTTGGCAAAGTGTTTAAGACATTCAAAGTGTCGTTTGTATTTGCACCTCAAAAGGATGAGAAATCATG
A

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

51.337

100

0.516
  pilN Vibrio campbellii strain DS40M4

53.371

95.699

0.511

Multiple sequence alignment