Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R2H34_RS01960 Genome accession   NZ_CP137746
Coordinates   419177..420403 (-) Length   408 a.a.
NCBI ID   WP_318342397.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414177..425403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS01935 - 415512..415838 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  R2H34_RS01940 rlmB 416028..416777 (+) 750 WP_151711193.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  R2H34_RS01945 - 416808..417719 (+) 912 WP_151711192.1 DMT family transporter -
  R2H34_RS01950 coaE 417716..418315 (-) 600 WP_151711191.1 dephospho-CoA kinase -
  R2H34_RS01955 pilD 418317..419177 (-) 861 WP_318342396.1 A24 family peptidase Machinery gene
  R2H34_RS01960 pilC 419177..420403 (-) 1227 WP_318342397.1 type II secretion system F family protein Machinery gene
  R2H34_RS01965 pilB 420428..422152 (-) 1725 WP_318342398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R2H34_RS01970 tpiA 422498..423289 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  R2H34_RS01975 secG 423302..423631 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  R2H34_RS01995 rimP 424254..424778 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44904.33 Da        Isoelectric Point: 9.9649

>NTDB_id=900491 R2H34_RS01960 WP_318342397.1 419177..420403(-) (pilC) [Acinetobacter sp. 16]
MVAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVGMSKWMQEYWFILIIVVGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=900491 R2H34_RS01960 WP_318342397.1 419177..420403(-) (pilC) [Acinetobacter sp. 16]
ATGGTAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAACCCATCCATGCGTGAGGT
CGTATTAGGTTTAAAAAACGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCTTTAAGAAAATATCCTCAATATTTCGACA
ATTTATTTTGTTCACTCGTCGAATCTGGTGAACAATCAGGTGCCCTTGAAACGATGCTAGATCGTGTTGCTGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGATCTATTTAGTTCATTTGGTGCAGACTTACCCGCATTTA
CCAAAATGGTGGTTGGTATGTCCAAATGGATGCAAGAGTATTGGTTCATTCTGATTATTGTTGTTGGTGCGATTATTGCT
GCATTCCTAGAAGCTAAAAAACGTAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGATTGCCGATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCCCGCTACAGTCGTACACTAGCAACGACATTTGCGGCGGGCGTTCCTTTAATCG
ATGCGCTTACATCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAGATTAGAGAAGATGTTGCA
ACTGGACAACAACTGCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCTATGGCAATTCAAATGGTCGCAATTGGTGA
AGAGTCAGGTGCACTTGATTCGATGTTAGATAAAGTCGCGACACACTATGAAAATGAGGTCGACAACGCAGTCGATGGTC
TGACTTCGATGATGGAACCTCTTATTATGGCAATACTTGGTGTGTTAGTGGGTGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.912

100

0.919
  pilC Acinetobacter baylyi ADP1

86.765

100

0.868
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

41.278

99.755

0.412
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.406

98.284

0.368