Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R2H34_RS01955 Genome accession   NZ_CP137746
Coordinates   418317..419177 (-) Length   286 a.a.
NCBI ID   WP_318342396.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413317..424177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS01935 - 415512..415838 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  R2H34_RS01940 rlmB 416028..416777 (+) 750 WP_151711193.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  R2H34_RS01945 - 416808..417719 (+) 912 WP_151711192.1 DMT family transporter -
  R2H34_RS01950 coaE 417716..418315 (-) 600 WP_151711191.1 dephospho-CoA kinase -
  R2H34_RS01955 pilD 418317..419177 (-) 861 WP_318342396.1 A24 family peptidase Machinery gene
  R2H34_RS01960 pilC 419177..420403 (-) 1227 WP_318342397.1 type II secretion system F family protein Machinery gene
  R2H34_RS01965 pilB 420428..422152 (-) 1725 WP_318342398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R2H34_RS01970 tpiA 422498..423289 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  R2H34_RS01975 secG 423302..423631 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32074.67 Da        Isoelectric Point: 7.5073

>NTDB_id=900490 R2H34_RS01955 WP_318342396.1 418317..419177(-) (pilD) [Acinetobacter sp. 16]
MQSFFLYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHHEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLVLRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTASAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=900490 R2H34_RS01955 WP_318342396.1 418317..419177(-) (pilD) [Acinetobacter sp. 16]
ATGCAATCTTTTTTCCTTTACTTTTTAGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGTCTGTGCATCGG
AAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCATGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCTCTTATTAGTTGGTTAGTACTTCGCGGTAAATGTGGCACTTGCCAAAACCCAATTAG
CATTCGCTACCCGCTGATTGAACTACTTACTATGATCTGCTCATTGATCGTTGTGGCGGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACTTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTATTAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTTAAAATCATCACTGGCAAAGAAGGCATGGGCTATG
GAGATTTTAAACTGCTTGCCGCCCTTGGTGCATGGATGGGTCCGATGATGCTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.818

100

0.818
  pilD Acinetobacter baumannii D1279779

81.469

100

0.815
  pilD Vibrio cholerae strain A1552

50.871

100

0.51
  pilD Vibrio campbellii strain DS40M4

51.504

93.007

0.479
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441