Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R2B70_RS02310 Genome accession   NZ_CP137630
Coordinates   488129..489370 (-) Length   413 a.a.
NCBI ID   WP_209794187.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483129..494370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS02280 (R2B70_02280) - 483930..485114 (+) 1185 WP_318162531.1 tetratricopeptide repeat protein -
  R2B70_RS02285 (R2B70_02285) mutT 485123..485527 (+) 405 WP_318162532.1 8-oxo-dGTP diphosphatase MutT -
  R2B70_RS02290 (R2B70_02290) yacG 485586..485780 (-) 195 WP_042077620.1 DNA gyrase inhibitor YacG -
  R2B70_RS02295 (R2B70_02295) zapD 485793..486515 (-) 723 WP_209794190.1 cell division protein ZapD -
  R2B70_RS02300 (R2B70_02300) coaE 486553..487167 (-) 615 WP_318162533.1 dephospho-CoA kinase -
  R2B70_RS02305 (R2B70_02305) pilD 487186..488061 (-) 876 WP_318162534.1 A24 family peptidase Machinery gene
  R2B70_RS02310 (R2B70_02310) pilC 488129..489370 (-) 1242 WP_209794187.1 type II secretion system F family protein Machinery gene
  R2B70_RS02315 (R2B70_02315) pilB 489498..491204 (-) 1707 WP_042077628.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  R2B70_RS02320 (R2B70_02320) - 491208..491624 (-) 417 WP_318162535.1 pilin -
  R2B70_RS02325 (R2B70_02325) nadC 491934..492809 (-) 876 WP_318162536.1 carboxylating nicotinate-nucleotide diphosphorylase -
  R2B70_RS02330 (R2B70_02330) - 492813..493283 (-) 471 WP_042077632.1 TIGR02281 family clan AA aspartic protease -
  R2B70_RS02335 (R2B70_02335) ampD 493396..493965 (+) 570 WP_318162537.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45484.44 Da        Isoelectric Point: 9.8675

>NTDB_id=899518 R2B70_RS02310 WP_209794187.1 488129..489370(-) (pilC) [Aeromonas sp. XH]
MATLAQKQNAPKKVFSFRWHGFNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALHRHPRYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKNEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEEIFRSFGAELPAFTRFVIGISRFMQSWWYVIFGGLA
LAIFLYVRAWRKSQKVRDSTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=899518 R2B70_RS02310 WP_209794187.1 488129..489370(-) (pilC) [Aeromonas sp. XH]
ATGGCTACATTAGCTCAAAAACAGAACGCACCAAAAAAGGTCTTCTCCTTCCGCTGGCACGGGTTCAATCGCAAGGGACA
GAAGGTGTCCGGCGAGTTGCAGGCCGACAGCATCAATACCGTCAAGGCGGAACTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGACAGGGGCTGTTCTCCAAGGGCGGCGCCCGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTGCCCCTGGTACAGAGCCTGCAGATCATCGCACGCGGCCATGAAAAGGCGGC
GGTGCGCGAACTGATCGGCCAGATCGCCGCCGATGTGGAGACAGGTACCCCGCTGTCCGAGGCACTGCACCGTCACCCCC
GTTACTTCGACGATCTCTATTGCGACCTGGTCGAGGCCGGAGAGCAGTCCGGTGCACTGGAAACCATCTACGACCGGATT
GCCACCTATCGCGAGAAGAACGAGGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGGCCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTATTCGTCATCCCCCAGTTCGAGGAGATCTTCCGGAGCTTCGGGGCCGAGT
TGCCCGCCTTCACCCGGTTCGTCATCGGCATCTCCCGCTTCATGCAGTCGTGGTGGTATGTCATCTTTGGCGGCCTCGCC
CTCGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTCAGGGACAGCACAGACAGGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCCCTGGTGGATGCGCTGGTCTCGGCGGCCGGGGCGTCGGGCAACTATGTCTATCGCACCGCCATCATGGCCATTCGC
AACGAGGTAGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGCGAAGAGTCCGGCGCCATCGATGACATGCTCTCCAAGGTCGCAGCCATCTTCGAACAGGAGGTGGACGACA
TGGTCGACGGCCTCACCAGCCTGCTGGAACCCATCATCATGGTGGTACTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATCTTCAAGCTCGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Legionella pneumophila strain ERS1305867

52.593

98.063

0.516
  pilC Acinetobacter baumannii D1279779

51.122

97.094

0.496
  pilC Acinetobacter baylyi ADP1

50.63

96.126

0.487
  pilC Vibrio cholerae strain A1552

46.814

98.789

0.462
  pilC Vibrio campbellii strain DS40M4

45.865

96.61

0.443
  pilG Neisseria meningitidis 44/76-A

40.796

97.337

0.397
  pilG Neisseria gonorrhoeae MS11

40.796

97.337

0.397
  pilC Thermus thermophilus HB27

38.5

96.852

0.373