Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R2B70_RS02305 Genome accession   NZ_CP137630
Coordinates   487186..488061 (-) Length   291 a.a.
NCBI ID   WP_318162534.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482186..493061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS02280 (R2B70_02280) - 483930..485114 (+) 1185 WP_318162531.1 tetratricopeptide repeat protein -
  R2B70_RS02285 (R2B70_02285) mutT 485123..485527 (+) 405 WP_318162532.1 8-oxo-dGTP diphosphatase MutT -
  R2B70_RS02290 (R2B70_02290) yacG 485586..485780 (-) 195 WP_042077620.1 DNA gyrase inhibitor YacG -
  R2B70_RS02295 (R2B70_02295) zapD 485793..486515 (-) 723 WP_209794190.1 cell division protein ZapD -
  R2B70_RS02300 (R2B70_02300) coaE 486553..487167 (-) 615 WP_318162533.1 dephospho-CoA kinase -
  R2B70_RS02305 (R2B70_02305) pilD 487186..488061 (-) 876 WP_318162534.1 A24 family peptidase Machinery gene
  R2B70_RS02310 (R2B70_02310) pilC 488129..489370 (-) 1242 WP_209794187.1 type II secretion system F family protein Machinery gene
  R2B70_RS02315 (R2B70_02315) pilB 489498..491204 (-) 1707 WP_042077628.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  R2B70_RS02320 (R2B70_02320) - 491208..491624 (-) 417 WP_318162535.1 pilin -
  R2B70_RS02325 (R2B70_02325) nadC 491934..492809 (-) 876 WP_318162536.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32206.56 Da        Isoelectric Point: 7.7991

>NTDB_id=899517 R2B70_RS02305 WP_318162534.1 487186..488061(-) (pilD) [Aeromonas sp. XH]
MAPLIELAQALPWLYLSLVFLFSLMVGSFLNVVIHRLPIMMERDWHAEYTDYFGDHTPPIPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCRAPISARYPLVELLTALLSVAVAATLTPGWGTLAALVLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGFVPLADAVIGAMAGYLVLWALYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQVLPIVLLLSS
LVGAAIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDSITRWYLHVVL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=899517 R2B70_RS02305 WP_318162534.1 487186..488061(-) (pilD) [Aeromonas sp. XH]
ATGGCGCCCCTGATCGAACTGGCCCAGGCCCTGCCCTGGCTTTATCTCTCCCTGGTGTTTCTCTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGACTGGCACGCCGAATACACCGACTATTTCG
GTGACCATACGCCCCCCATCCCGGCCACAGGACGCTACAACCTGATGGTGCCCCGCTCCCGCTGCCCCCATTGCGACCAC
CCCATTGGTGCGCTGGAGAATATCCCCCTGCTGAGCTGGCTCTGGCTCAGGGGGCGCTGCCGCAACTGCCGTGCCCCCAT
CTCAGCCCGCTATCCCCTGGTCGAATTGCTCACGGCCCTGCTGTCGGTCGCCGTGGCCGCCACCCTCACTCCCGGCTGGG
GAACCTTGGCGGCCCTCGTGCTGACCTGGGTACTGGTGGCGCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAACCTGTTGGGAGGCTTCGTCCCCCTGGCGGATGCGGTGAT
CGGCGCCATGGCAGGCTATCTGGTGCTCTGGGCCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGTT
ATGGCGATTTCAAGCTGCTGGCAGCCCTCGGCGCCTGGCTCGGCTGGCAGGTGCTGCCCATAGTGCTGCTGCTCTCCTCC
CTGGTCGGCGCCGCCATAGGTATCGGCCTCATCCTGCTTCGCAACCACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTA
TCTCGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAGCATCACCCGCTGGTATCTCCATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.806

98.969

0.612
  pilD Vibrio campbellii strain DS40M4

56.552

99.656

0.564
  pilD Acinetobacter baumannii D1279779

54.122

95.876

0.519
  pilD Acinetobacter nosocomialis M2

54.122

95.876

0.519
  pilD Neisseria gonorrhoeae MS11

50.746

92.096

0.467