Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4708_RS07360 Genome accession   NZ_CP137104
Coordinates   1435719..1436540 (+) Length   273 a.a.
NCBI ID   WP_000601671.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430719..1441540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS07335 - 1431073..1431681 (+) 609 WP_000083614.1 hypothetical protein -
  R4708_RS07340 - 1431674..1432084 (+) 411 WP_000595763.1 hypothetical protein -
  R4708_RS07345 ply 1432095..1433510 (+) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  R4708_RS07350 - 1434391..1435107 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4708_RS07355 - 1435231..1435702 (+) 472 Protein_1428 MarR family winged helix-turn-helix transcriptional regulator -
  R4708_RS07360 rcrP 1435719..1436540 (+) 822 WP_000601671.1 ABC transporter permease Regulator
  R4708_RS07365 - 1436733..1437578 (+) 846 Protein_1430 ATP-binding cassette domain-containing protein -
  R4708_RS07370 - 1437644..1438006 (+) 363 WP_000078804.1 DUF2200 domain-containing protein -
  R4708_RS07375 - 1438003..1438506 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  R4708_RS07380 - 1438620..1439066 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4708_RS07385 - 1439071..1439745 (+) 675 WP_000725707.1 LiaF transmembrane domain-containing protein -
  R4708_RS07390 - 1439988..1440185 (+) 198 Protein_1435 N-acetylmuramoyl-L-alanine amidase family protein -
  R4708_RS07395 - 1440210..1440341 (-) 132 WP_001811306.1 hypothetical protein -
  R4708_RS07400 - 1440435..1440734 (+) 300 WP_001815024.1 DUF4651 domain-containing protein -
  R4708_RS07405 - 1440731..1441048 (+) 318 WP_000615767.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30652.35 Da        Isoelectric Point: 5.9310

>NTDB_id=895423 R4708_RS07360 WP_000601671.1 1435719..1436540(+) (rcrP) [Streptococcus pneumoniae strain LM]
MILLAILFTCFLVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYISRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=895423 R4708_RS07360 WP_000601671.1 1435719..1436540(+) (rcrP) [Streptococcus pneumoniae strain LM]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTTGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATATTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593