Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R3L12_RS14295 Genome accession   NZ_CP137057
Coordinates   3049425..3050651 (-) Length   408 a.a.
NCBI ID   WP_149929793.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3044425..3055651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS14265 (R3L12_14245) - 3044457..3045761 (+) 1305 WP_149929796.1 tetratricopeptide repeat protein -
  R3L12_RS14270 (R3L12_14250) - 3045846..3046172 (+) 327 WP_004932453.1 pyrimidine/purine nucleoside phosphorylase -
  R3L12_RS14275 (R3L12_14255) rlmB 3046274..3047020 (+) 747 WP_004932455.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  R3L12_RS14280 (R3L12_14260) - 3047058..3047987 (+) 930 WP_025095298.1 DMT family transporter -
  R3L12_RS14285 (R3L12_14265) coaE 3047963..3048562 (-) 600 WP_149929795.1 dephospho-CoA kinase -
  R3L12_RS14290 (R3L12_14270) pilD 3048565..3049425 (-) 861 WP_149929794.1 A24 family peptidase Machinery gene
  R3L12_RS14295 (R3L12_14275) pilC 3049425..3050651 (-) 1227 WP_149929793.1 type II secretion system F family protein Machinery gene
  R3L12_RS14300 (R3L12_14280) pilB 3050675..3052390 (-) 1716 WP_149929792.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R3L12_RS14305 (R3L12_14285) tpiA 3052654..3053451 (+) 798 WP_004932474.1 triose-phosphate isomerase -
  R3L12_RS14310 (R3L12_14290) secG 3053461..3053790 (+) 330 WP_004932477.1 preprotein translocase subunit SecG -
  R3L12_RS14330 (R3L12_14310) rimP 3054867..3055391 (+) 525 WP_004932478.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45192.53 Da        Isoelectric Point: 10.0186

>NTDB_id=894489 R3L12_RS14295 WP_149929793.1 3049425..3050651(-) (pilC) [Acinetobacter soli strain SNUBHAB0075]
MAAKKVQTVPTFAYEGVDRKGIKLKGELSARNMALAKVTLRKQGITIRTIREKRRNLLEGLFKKRVKPLDITIFTRQLST
MMKAGVPLVQAFEIVAEGLDNPAMREVVLGLKTDVEGGNTFAGALRKYPQHFDNLFCSLIESGEQSGSLETMLERVAVYK
EKSEVLKQKIKKAMKYPAMVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQMVVNMSNWMQSYWILLIFIIGAVIA
GFLEARKRSKTFRDRLDQLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATNNSIYEHAVLKIRDDVS
TGQQLHFAMRVSNRFPTMAIQMVAIGEESGALDEMLDKVANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=894489 R3L12_RS14295 WP_149929793.1 3049425..3050651(-) (pilC) [Acinetobacter soli strain SNUBHAB0075]
ATGGCAGCAAAAAAAGTACAAACAGTGCCCACTTTCGCGTATGAAGGTGTTGATCGTAAGGGGATCAAACTTAAAGGGGA
GCTTTCTGCCCGTAATATGGCATTGGCCAAAGTCACCTTGCGTAAACAAGGCATTACCATTCGAACCATTCGTGAAAAGC
GCCGCAACCTGCTTGAAGGACTATTTAAGAAAAGAGTTAAACCGCTCGATATCACGATTTTTACTCGCCAGTTGTCAACC
ATGATGAAAGCAGGTGTGCCGCTGGTTCAGGCCTTTGAAATTGTCGCTGAAGGCTTGGATAATCCTGCCATGCGCGAGGT
GGTACTCGGACTCAAAACAGATGTCGAAGGAGGCAATACTTTTGCTGGTGCGCTGCGTAAATATCCGCAGCACTTCGACA
ATCTGTTTTGCTCCCTAATTGAGTCGGGTGAACAATCGGGTTCGCTTGAAACCATGCTAGAGCGAGTTGCGGTATATAAA
GAAAAAAGTGAAGTATTAAAGCAGAAAATCAAAAAAGCCATGAAGTATCCGGCTATGGTGATTGTGGTCGCGATCGTGGT
GACCATCATTTTGATGGTGAAAGTGGTTCCGGTATTTAAAGATTTATTTACCTCATTTGGCGCAGACTTGCCAGCCTTTA
CCCAGATGGTGGTGAACATGTCCAACTGGATGCAGTCTTACTGGATATTGCTCATTTTCATTATCGGTGCGGTCATTGCT
GGCTTTTTAGAGGCACGTAAACGCAGCAAAACTTTTCGTGATCGTCTAGATCAACTTGTGCTTCGTCTGCCGATTGTGGG
TGATCTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGTACCCTTGCCACCACTTTCGCAGCGGGTGTCCCGCTGATTG
ATGCGCTGGCATCTACCGCAGGTGCAACCAATAACAGTATTTATGAACATGCTGTGCTTAAAATTCGTGACGATGTGTCT
ACAGGCCAGCAGCTTCATTTTGCCATGCGCGTGTCGAATCGTTTCCCCACGATGGCCATTCAAATGGTGGCTATTGGTGA
AGAATCCGGGGCACTAGATGAAATGCTGGACAAAGTTGCGAATTATTATGAAAGTGAAGTCGATCACGCGGTAGACGGAC
TTACATCGATGATGGAACCCTTGATTATGGCAATTCTGGGCATTTTAGTGGGTGGTCTGGTGATTGCGATGTATCTTCCG
ATTTTCCAAATGGGTTCAGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

91.422

100

0.914
  pilC Acinetobacter baumannii D1279779

85.049

100

0.85
  pilC Pseudomonas stutzeri DSM 10701

59.169

100

0.593
  pilC Legionella pneumophila strain ERS1305867

52.513

97.549

0.512
  pilG Neisseria gonorrhoeae MS11

46.115

97.794

0.451
  pilG Neisseria meningitidis 44/76-A

45.865

97.794

0.449
  pilC Vibrio cholerae strain A1552

42.998

99.755

0.429
  pilC Vibrio campbellii strain DS40M4

43.25

98.039

0.424
  pilC Thermus thermophilus HB27

36.946

99.51

0.368