Detailed information NTG0894488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R3L12_RS14290
• Genome accession: NZ_CP137057
• Coordinates: 3048565..3049425 (-)
• Length: 286 a.a.
• NCBI ID: WP_149929794.1
• Uniprot ID: -
• Organism: Acinetobacter soli strain SNUBHAB0075
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3043565..3054425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L12_RS14265 (R3L12_14245)	-	3044457..3045761 (+)	1305	WP_149929796.1	tetratricopeptide repeat protein	-
R3L12_RS14270 (R3L12_14250)	-	3045846..3046172 (+)	327	WP_004932453.1	pyrimidine/purine nucleoside phosphorylase	-
R3L12_RS14275 (R3L12_14255)	rlmB	3046274..3047020 (+)	747	WP_004932455.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
R3L12_RS14280 (R3L12_14260)	-	3047058..3047987 (+)	930	WP_025095298.1	DMT family transporter	-
R3L12_RS14285 (R3L12_14265)	coaE	3047963..3048562 (-)	600	WP_149929795.1	dephospho-CoA kinase	-
R3L12_RS14290 (R3L12_14270)	pilD	3048565..3049425 (-)	861	WP_149929794.1	A24 family peptidase	Machinery gene
R3L12_RS14295 (R3L12_14275)	pilC	3049425..3050651 (-)	1227	WP_149929793.1	type II secretion system F family protein	Machinery gene
R3L12_RS14300 (R3L12_14280)	pilB	3050675..3052390 (-)	1716	WP_149929792.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R3L12_RS14305 (R3L12_14285)	tpiA	3052654..3053451 (+)	798	WP_004932474.1	triose-phosphate isomerase	-
R3L12_RS14310 (R3L12_14290)	secG	3053461..3053790 (+)	330	WP_004932477.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31933.20 Da
• Isoelectric Point: 7.6399

>NTDB_id=894488 R3L12_RS14290 WP_149929794.1 3048565..3049425(-) (pilD) [Acinetobacter soli strain SNUBHAB0075]
MSDIFSYFITNSTALYLAIGILSLCIGSFLNVVIYRTPKMMEQEWTQECQLLLHPEQAVIETEKLSLSSPASSCPHCHAP
IRWYHNIPVLSWLALRGKCHACDHPITIRYPAIEVLTLLTSLTVLMVLGPTLKMLFGLVLTWMLIALTFIDFDTQLLPDR
YTLTLAGLGLAINSAHVYVSPNEAIWGYVIGFLCLWVVYYLFKLLTKKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF
VGAIIGVVLLRIRKQNQPFAFGPFIAIAGWIAFLWGDAIMRVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=894488 R3L12_RS14290 WP_149929794.1 3048565..3049425(-) (pilD) [Acinetobacter soli strain SNUBHAB0075]
ATGTCTGATATCTTCTCGTATTTTATTACCAATTCGACTGCGCTTTATCTCGCGATTGGTATCTTAAGCCTGTGTATTGG
CAGCTTTTTAAATGTGGTGATCTACCGCACACCCAAAATGATGGAGCAGGAATGGACACAAGAGTGCCAGTTGTTGCTGC
ATCCGGAACAGGCCGTGATTGAAACCGAAAAACTCAGTCTAAGTTCACCTGCATCTTCATGTCCGCATTGTCATGCGCCA
ATTCGCTGGTATCACAATATTCCAGTGCTAAGCTGGCTGGCTTTACGCGGGAAATGTCATGCGTGTGACCACCCGATTAC
AATCCGCTACCCCGCCATTGAAGTGCTTACGCTGCTGACCTCACTGACTGTGCTGATGGTTTTGGGGCCAACGCTTAAAA
TGTTGTTTGGGCTAGTGCTCACTTGGATGTTAATTGCGCTGACCTTTATCGACTTTGATACTCAACTTTTACCAGATCGC
TATACCCTCACCCTCGCGGGATTAGGCTTGGCCATCAATAGCGCGCATGTGTATGTTTCTCCCAATGAAGCCATCTGGGG
CTATGTCATCGGCTTTTTGTGTTTATGGGTGGTGTATTACCTGTTTAAACTGCTCACCAAAAAAGAAGGCATGGGATACG
GCGATTTCAAACTACTGGCAGCGCTGGGGGCTTGGATGGGGCCGCTAATGCTGCCGCTGATTGTGCTGTTGTCGTCGTTT
GTGGGGGCGATTATTGGTGTTGTACTTTTGCGTATTCGCAAGCAAAATCAGCCTTTTGCATTTGGTCCCTTTATTGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGAGATGCAATTATGCGGGTATATTTAGGAGGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	76.224	100	0.762
pilD	Acinetobacter baumannii D1279779	75.874	100	0.759
pilD	Vibrio cholerae strain A1552	53.903	94.056	0.507
pilD	Vibrio campbellii strain DS40M4	52.434	93.357	0.49
pilD	Neisseria gonorrhoeae MS11	46.183	91.608	0.423