Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   RYQ61_RS02475 Genome accession   NZ_CP136799
Coordinates   486909..487304 (-) Length   131 a.a.
NCBI ID   WP_020999177.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 481909..492304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02455 (RYQ61_02455) - 482434..483720 (-) 1287 WP_021003236.1 ABC transporter substrate-binding protein -
  RYQ61_RS02460 (RYQ61_02460) - 483717..484400 (-) 684 WP_003076096.1 response regulator transcription factor -
  RYQ61_RS02465 (RYQ61_02465) - 484393..485706 (-) 1314 WP_048785640.1 sensor histidine kinase -
  RYQ61_RS02470 (RYQ61_02470) - 485706..486692 (-) 987 WP_102568313.1 sugar ABC transporter substrate-binding protein -
  RYQ61_RS02475 (RYQ61_02475) ssbB/cilA 486909..487304 (-) 396 WP_020999177.1 single-stranded DNA-binding protein Machinery gene
  RYQ61_RS02480 (RYQ61_02480) ytpR 487376..488002 (-) 627 WP_102568314.1 YtpR family tRNA-binding protein -
  RYQ61_RS02485 (RYQ61_02485) - 488019..488336 (-) 318 WP_102568315.1 thioredoxin family protein -
  RYQ61_RS02490 (RYQ61_02490) - 488333..488620 (-) 288 WP_003074072.1 DUF4651 domain-containing protein -
  RYQ61_RS02495 (RYQ61_02495) pepA 488741..489805 (+) 1065 WP_102568316.1 glutamyl aminopeptidase -
  RYQ61_RS02500 (RYQ61_02500) - 490094..490654 (-) 561 WP_102568317.1 folate family ECF transporter S component -
  RYQ61_RS02505 (RYQ61_02505) - 490836..492140 (-) 1305 WP_317289760.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14729.67 Da        Isoelectric Point: 5.9381

>NTDB_id=892701 RYQ61_RS02475 WP_020999177.1 486909..487304(-) (ssbB/cilA) [Streptococcus intermedius strain XH2169]
MYNKVILIGRLVNTPEVNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=892701 RYQ61_RS02475 WP_020999177.1 486909..487304(-) (ssbB/cilA) [Streptococcus intermedius strain XH2169]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTGAATACACCAGAGGTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACGCTTGCCATCAACCGTCGTTATAAAGGGCAAAATGGCGAACGAGAAGCAGACTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGCTATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382